View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3486_low_10 (Length: 218)

Name: NF3486_low_10
Description: NF3486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3486_low_10
NF3486_low_10
[»] chr7 (13 HSPs)
chr7 (12-208)||(15489627-15489822)
chr7 (12-208)||(15557668-15557863)
chr7 (12-198)||(15431232-15431418)
chr7 (71-208)||(16944265-16944402)
chr7 (101-208)||(15450827-15450934)
chr7 (102-204)||(15431419-15431521)
chr7 (12-85)||(15450692-15450765)
chr7 (103-208)||(15534703-15534808)
chr7 (103-208)||(15427852-15427957)
chr7 (103-208)||(15480837-15480942)
chr7 (103-208)||(15483762-15483867)
chr7 (135-208)||(15447384-15447457)
chr7 (25-60)||(15450790-15450825)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 15489627 - 15489822
Alignment:
Q  12 tgagatgaaaagctgaatgggggagtgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaagagaggaattttaataagaatttgcgg 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||    
T  15489627 tgagatgaaaagctgaatgggggagcgcgatagaaacatcattatcatgaaaaattgaagatagagcacaaa-gcgaggaaatttaataagaatttgcgg 15489725  T
Q  112 aagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtattaactgat 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15489726 aagaaaatacagattgtagaaaaactctcaattagtaaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtattaactgat 15489822  T

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Target: chr7; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 15557668 - 15557863
Alignment:
Q  12 tgagatgaaaagctgaatgggggagtgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaagagaggaattttaataagaatttgcgg 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||    
T  15557668 tgagatgaaaagctgaatgggggagcgcgatagaaacatcattatcatgaaaaattgaagatagagcacaaa-gcgaggaaatttaataagaatttgcgg 15557766  T
Q  112 aagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtattaactgat 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15557767 aagaaaatacagattgtagaaaaactctcaattagtaaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtattaactgat 15557863  T

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Target: chr7; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 15431232 - 15431418
Alignment:
Q  12 tgagatgaaaagctgaatgggggagtgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaagagaggaattttaataagaatttgcgg 111  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  15431232 tgagattaaaagctgaatgggggagcgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaagagaggaaatttcttaagaatttgcgg 15431331  T
Q  112 aagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15431332 aagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcacaagaatgagaacattgt 15431418  T

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Target: chr7; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 16944265 - 16944402
Alignment:
Q  71 gatagagcacaaaagagaggaattttaataagaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggat 170  Q
    ||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16944265 gatagagcacaaaagcgaggaaatttaataagaatttgcagaagaaaatacagattttagaaaaactctcaattaataaggtcaaataatgaaaatggat 16944364  T
Q  171 gaattatgcactagaatgagaacattgtattaactgat 208  Q
    ||||| || |||||||||||||||||||| ||||||||    
T  16944365 gaattgtgtactagaatgagaacattgtactaactgat 16944402  T

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Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 15450827 - 15450934
Alignment:
Q  101 agaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  15450827 agaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactggaatgagaacattatat 15450926  T
Q  201 taactgat 208  Q
    ||||||||    
T  15450927 taactgat 15450934  T

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Target: chr7; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 15431419 - 15431521
Alignment:
Q  102 gaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatt 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15431419 gaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcacaagaatgagaacattgtatt 15431518  T
Q  202 aac 204  Q
    |||    
T  15431519 aac 15431521  T

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Target: chr7; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 15450692 - 15450765
Alignment:
Q  12 tgagatgaaaagctgaatgggggagtgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaag 85  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15450692 tgagatgaaaagctgaataggggagcgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaag 15450765  T

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Target: chr7; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 15534703 - 15534808
Alignment:
Q  103 aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatta 202  Q
    ||||||| |||||||| ||| ||| ||| ||||||||||||||| |||||| ||| ||||||||||| | |||||||||| |||||||||||||||| ||    
T  15534703 aatttgcagaagaaaacacaaattttaggaaaactctcaattaacaaggtcgaatgatgaaaatggacggattatgcacttgaatgagaacattgtagta 15534802  T
Q  203 actgat 208  Q
    ||||||    
T  15534803 actgat 15534808  T

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Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 15427852 - 15427957
Alignment:
Q  103 aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatta 202  Q
    |||||||  ||||||| | | ||| ||| |||||||||||||||  ||||| ||| ||||||||||| | |||||||||| |||||||||||||||| ||    
T  15427852 aatttgcataagaaaacagaaattttaggaaaactctcaattaacgaggtccaatgatgaaaatggacggattatgcacttgaatgagaacattgtagta 15427951  T
Q  203 actgat 208  Q
    ||||||    
T  15427952 actgat 15427957  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 15480942 - 15480837
Alignment:
Q  103 aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatta 202  Q
    |||||||  ||||||||||| | | ||| |||||||||||||||  ||||| ||| ||||||||||||| ||||||||||  ||||||||||||||| ||    
T  15480942 aatttgcaaaagaaaatacaaaatttaggaaaactctcaattaacgaggtcgaatgatgaaaatggatggattatgcacttaaatgagaacattgtagta 15480843  T
Q  203 actgat 208  Q
    | ||||    
T  15480842 attgat 15480837  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 15483762 - 15483867
Alignment:
Q  103 aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatta 202  Q
    |||||||  ||||||| | | ||| ||| |||||||||||||||  ||||||||| ||||||||||| | |||||||||| |||||| ||||||||| ||    
T  15483762 aatttgcataagaaaacagaaattttaggaaaactctcaattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgaaaacattgtagta 15483861  T
Q  203 actgat 208  Q
    ||||||    
T  15483862 actgat 15483867  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 15447384 - 15447457
Alignment:
Q  135 actctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtattaactgat 208  Q
    ||||||||||||  ||||| ||| ||||||||||| | |||||||||| |||||||||||||||| ||||||||    
T  15447384 actctcaattaacgaggtcgaatgatgaaaatggacggattatgcacttgaatgagaacattgtagtaactgat 15447457  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 15450790 - 15450825
Alignment:
Q  25 tgaatgggggagtgcgatagaaacatcattatcatg 60  Q
    |||||||||||| |||||||||||||||||||||||    
T  15450790 tgaatgggggagcgcgatagaaacatcattatcatg 15450825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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