View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3486_low_8 (Length: 232)
Name: NF3486_low_8
Description: NF3486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3486_low_8 |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 24532253 - 24532022
Alignment:
| Q |
1 |
ttccaatacattgaccattaacccatgcttttcctctttgaaggcctatcaaatccaggactacaaggtttgacccttcaggggtcttgaaagtggtctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24532253 |
ttccaatacattgaccattaacccatgcttttcctctttgaaggcctatcaaatccaggactacaaggtttgacccttcaggggtcttgaaagtggtctt |
24532154 |
T |
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| Q |
101 |
gtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactccattagatttgggatcatagaactttctagccataccattcatccca |
200 |
Q |
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| T |
24532153 |
gtaccaagtcattggtactcctatagaaacattacgtggtatccatggaactccattagatttgggatcatagaactttctagccataccattcatccca |
24532054 |
T |
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| Q |
201 |
actttgtatgaccaagtagattttgataaatc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
24532053 |
actttgtatgaccaagtagattttgataaatc |
24532022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 24525581 - 24525350
Alignment:
| Q |
1 |
ttccaatacattgaccattaacccatgcttttcctctttgaaggcctatcaaatccaggactacaaggtttgacccttcaggggtcttgaaagtggtctt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24525581 |
ttccaatactttgaccattaacccatgcttttcctctttgaaggcctatcaaatccaggactacaaggtttgaccctttaggggtcttgaaagtggtctt |
24525482 |
T |
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| Q |
101 |
gtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactccattagatttgggatcatagaactttctagccataccattcatccca |
200 |
Q |
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| T |
24525481 |
gtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactccattagatctgggatcttagaactttctagccataccattcatccca |
24525382 |
T |
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| Q |
201 |
actttgtatgaccaagtagattttgataaatc |
232 |
Q |
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| T |
24525381 |
actttgtacgaccaagtagattttgataaatc |
24525350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 290529 - 290295
Alignment:
| Q |
1 |
ttccaatacattgaccattaacccatgcttttcctctttgaaggcctatcaaatccaggactacaaggtttgacccttcaggggtcttgaaagtggtctt |
100 |
Q |
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|||| |||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
290529 |
ttccgatactttgaccgttaacccatgcttttcctctttgaagacctatcaaatccaggactacaaggtttgaaccttcaggggtcttgaaagtggtctt |
290430 |
T |
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| Q |
101 |
gtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactccat---tagatttgggatcatagaactttctagccataccattcatc |
197 |
Q |
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|||||||||||||||| || || ||||||||||||||| | |||||||||| ||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
290429 |
gtaccaagtcattggtccttctatagaaacattacgtgtttgccatggaactacattggtagatttgggatcatagaactttctagccacaccattcatc |
290330 |
T |
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| Q |
198 |
ccaactttgtatgaccaagtagattttgataaatc |
232 |
Q |
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| T |
290329 |
ccaactttgtatgaccaagtagattttgataaatc |
290295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 280084 - 279850
Alignment:
| Q |
1 |
ttccaatacattgaccattaacccatgcttttcctctttgaaggcctatcaaatccaggactacaaggtttgacccttcaggggtcttgaaagtggtctt |
100 |
Q |
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||||||||| |||||||||||||||||||| |||| | |||||||||||||| |||| |||||| |||||| || ||||||||||||||||| ||||| |
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| T |
280084 |
ttccaatactttgaccattaacccatgcttctcctttctgaaggcctatcaagtccaagactacggggtttgtaccatcaggggtcttgaaagtagtctt |
279985 |
T |
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| Q |
101 |
gtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactcca---ttagatttgggatcatagaactttctagccataccattcatc |
197 |
Q |
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||||||||||||||||||||| ||||||||||| || | ||||| |||||||| | | ||||||||||||||||||| ||| ||||||||| ||| |
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| T |
279984 |
ataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttgggatcatagaactttttagtcataccatttatc |
279885 |
T |
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| Q |
198 |
ccaactttgtatgaccaagtagattttgataaatc |
232 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
279884 |
ccaactttgtacgaccaagtagattttgataaatc |
279850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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