View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3487_high_2 (Length: 530)
Name: NF3487_high_2
Description: NF3487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3487_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 1503948 - 1504447
Alignment:
| Q |
1 |
aattgaattgaaatgaatgtgactaatgattttggaattgagttgaatcagcagctcgatttaattcagttcatgaattatcaatgtcgtttccaaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
1503948 |
aattgaattgaaatgaatgtgactaatgattttggaattgagttgaatcagc---tcgatttaattcagctcatgaattatcaatgtcgttttcaaaagt |
1504044 |
T |
|
| Q |
101 |
atattctannnnnnnnnnnagcaaaaatagcgttgacgtgcttagcttggttcgtatattcatttcactcaagaatcaaactcaagattctcctnnnnnn |
200 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||| |||| |
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| T |
1504045 |
atattctatttttctttt-agcaaaaatagcgttgacg-----cgcttggttcgtatattcatttcactcaaaaatcgaactcaagattttcctgaaaaa |
1504138 |
T |
|
| Q |
201 |
nttattatatggtggagttcattaaccatttaagctcaattatttgattttattaggttaaatggttatcttaacaaaaattgagctgtttagaaataaa |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |
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| T |
1504139 |
tttgttatatggtggagttcattaaccatttaagctcaattatttgattttattaggttaaatggttatcttaac-aaaattgagctgttcagaagtaaa |
1504237 |
T |
|
| Q |
301 |
atttttggaaacattaatctatctttgctttcccttttcctttctggaaaatacatgtttatattgtttttcaacaaaactgcaccgttccgtacgtaca |
400 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1504238 |
atttttggaaacattaatctatctttg------cttttcctttcaggaaaatacaggtttatattgtttttcaactaaactgcaccgttccgtacgtaca |
1504331 |
T |
|
| Q |
401 |
ttagaaag-----taaaatttcnnnnnnnaagggagaccgtataatttctctttttctaaagtatgggaaaactaatgctatttcccttttcttacccac |
495 |
Q |
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|||||||| || |||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1504332 |
ttagaaagtataatataatttctttttttaagggagaccgtataatttttc-ttttctaaagtatgggaaaactaatgctatttcccttttcttacccac |
1504430 |
T |
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