View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3487_high_3 (Length: 477)
Name: NF3487_high_3
Description: NF3487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3487_high_3 |
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| [»] scaffold0233 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 15 - 461
Target Start/End: Original strand, 23996305 - 23996739
Alignment:
| Q |
15 |
ctgtggtggaggaatatttttctgttgcgtgaggaggggtggtttaacaaccatgttagtcgctctgttcgtgacggtattaataccctatgttggactg |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23996305 |
ctgtggtggaggaatatttttctgttgcgtgaggagggatggtttaacaaccatgttagtcgctctgttcgtgacggtattaataccctctgttggactg |
23996404 |
T |
|
| Q |
115 |
atgtttgcgtgggtggtgtgtcgtttcgggataggtttagtagattatttgagttgtcgactttgaaaggggggagtgtatctgcgatgtgcaatttagg |
214 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23996405 |
atgtttgcgtgggtggtgtgtcgttt------------agtagattatttgagttgtcgactttgaaaggggggagtgtatctgcgatgtgcaatttagg |
23996492 |
T |
|
| Q |
215 |
ttgggggagagatggtggagcgttgcagcggaggcgtaggctgtttgcttgggaggagaagttggtggggtaaattagccttttgcttgataatgttaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23996493 |
ttgggggagagatggtggagcgttgcagcggaggcgtaggctgtttgcttgggaggagaagttggtggggtaaattagccttttgcttgataatgttaat |
23996592 |
T |
|
| Q |
315 |
ttgcaggtcactaaggaagacagttggttatggtggttggattcatctcctatgtatattgtctgtagtgcttataagtttttgaatgatcaacttaacc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23996593 |
ttgcaggtcactaaggaagacagttggttatggtggttggattcatctcctatgtatattgtctgtagtgcttataagtttttgaatgatcaacttaacc |
23996692 |
T |
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| Q |
415 |
atgtagctgaagtccaattaccttcttttatgcataatgatgttcct |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23996693 |
atgtagctgaagtccaattaccttcttttatgcataatgatattcct |
23996739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 6724401 - 6724314
Alignment:
| Q |
244 |
ggaggcgtaggctgtttgcttgggaggagaagttggtggggtaaattagccttttgcttgataatgttaatttgcaggtcactaagga |
331 |
Q |
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||||||| ||| ||||||| ||||||||| ||||||||||| |||||| | ||||| |||||||||||||||||| | |||||| |
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| T |
6724401 |
ggaggcggaggttgtttgcgtgggaggaggagttggtgggggaaattaaattactgcttcttaatgttaatttgcaggttaataagga |
6724314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 45967888 - 45967579
Alignment:
| Q |
18 |
tggtggaggaatatttttctgttgcgtgaggaggggtggtttaacaaccatgttagtcgctctgttcgtgacggtattaataccctatgttggactgatg |
117 |
Q |
| |
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||||||||| | |||| ||||||||||||||| | ||||| || | ||| ||||||| ||||||| | ||| || |||||| || | ||||||||||| |
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| T |
45967888 |
tggtggagggacatttgtctgttgcgtgaggatgtttggttcaatagccacgttagtcactctgttggcgacaataataatactcttttttggactgatg |
45967789 |
T |
|
| Q |
118 |
tttgcgtgggtggtgtgtcgtttcgggataggtttagtagattatttgagttgtcgactttgaaaggggggagtgtatctgcgatgtgcaatttaggttg |
217 |
Q |
| |
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|||| |||||||||||||| || |||| | |||||| | |||||||| || ||||| |||| | || | || |||||| |||||| |||||| || |
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| T |
45967788 |
tttgggtgggtggtgtgtctttaagggacatatttagtcgtttatttgaattatcgacgctgaaggaggaaacagtgtctgcggtgtgcagtttagggtg |
45967689 |
T |
|
| Q |
218 |
ggggagagatggtggagcgttgcagcggaggcgtaggctgtttgcttgggaggagaagttggtggggtaaattagccttttgcttgataatgttaatttg |
317 |
Q |
| |
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|||| |||||||||||||| ||| |||| ||||| ||||| | ||||||||| ||||||| || || |||| ||||| ||||| || |||| ||| |
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| T |
45967688 |
ggggttagatggtggagcgtggcattggagacgtagattgttttcctgggaggaggagttggtaggagaacttaggcttttacttgaaaacattaacttg |
45967589 |
T |
|
| Q |
318 |
caggtcacta |
327 |
Q |
| |
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||||| |||| |
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| T |
45967588 |
caggttacta |
45967579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 38456691 - 38456531
Alignment:
| Q |
15 |
ctgtggtggaggaatatttttctgttgcgtgaggaggggtggtttaacaaccatgttagtcgctctgttcgtgacggtattaataccctatgttggactg |
114 |
Q |
| |
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|||||||||||| | |||| || | || ||||||| || |||||||||| |||||||| || |||||| || | || | ||||| || | |||||| | |
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| T |
38456691 |
ctgtggtggagggacatttatcagctgtgtgaggaaggatggtttaacagtcatgttagccgttctgttggtaatggcaaaaatactctcttttggacgg |
38456592 |
T |
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| Q |
115 |
atgtttgcgtgggtggtgtgtcgtttcgggataggtttagtagattatttgagttgtcgac |
175 |
Q |
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||||||| |||||||| |||||||| | || |||||||||||||||||| | |||||||| |
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| T |
38456591 |
atgtttgggtgggtggagtgtcgttacatgacaggtttagtagattatttcaattgtcgac |
38456531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 362
Target Start/End: Original strand, 32251555 - 32251717
Alignment:
| Q |
200 |
gatgtgcaatttaggttgggggagagatggtggagcgttgcagcggaggcgtaggctgtttgcttgggaggagaagttggtggggtaaattagccttttg |
299 |
Q |
| |
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|||||| |||||||| ||||||| |||||| || || | | | |||| |||||||||||||| ||||||||| ||||||| ||| || |||| | ||| |
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| T |
32251555 |
gatgtgtaatttagggtgggggatagatggaggtgcttggaattggagacgtaggctgtttgcgtgggaggaggagttggtaggggaacttaggccttta |
32251654 |
T |
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| Q |
300 |
cttgataatgttaatttgcaggtcactaaggaagacagttggttatggtggttggattcatct |
362 |
Q |
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||||| ||||| | ||||||||| |||| ||||| || ||||| ||| | |||||| ||||| |
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| T |
32251655 |
cttgacaatgtaactttgcaggttactagagaagatagatggttgtggagtttggatccatct |
32251717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 21579516 - 21579443
Alignment:
| Q |
66 |
catgttagtcgctctgttcgtgacggtattaataccctatgttggactgatgtttgcgtgggtggtgtgtcgtt |
139 |
Q |
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|||||||| ||||| ||| | |||| | ||||||| || | ||||||||||||||| ||||||||||||||||| |
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| T |
21579516 |
catgttagccgctccgttggcgacgattttaatactcttttttggactgatgtttgggtgggtggtgtgtcgtt |
21579443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 403
Target Start/End: Complemental strand, 25107476 - 25107271
Alignment:
| Q |
198 |
gcgatgtgcaatttaggttgggggagagatggtggagcgttgcagcggaggcgtaggctgtttgcttgggaggagaagttggtggggtaaattagccttt |
297 |
Q |
| |
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||||||||| |||||| |||||| |||||||||||||| || || | ||||| ||||||| ||||||||| ||||||| | || |||| |||| |
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| T |
25107476 |
gcgatgtgcggtttagggtgggggttagatggtggagcgtggctttggtgacgtagattgtttgcatgggaggagcagttggtagaagaacttagacttt |
25107377 |
T |
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| Q |
298 |
tgcttgataatgttaatttgcaggtcactaaggaagacagttggttatggtggttggattcatctcctatgtatattgtctgtagtgcttataagttttt |
397 |
Q |
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| ||||| || |||| |||||||| |||| | | || || ||||| ||| | |||||||||||| ||| || | ||| ||||||| || |||||||| |
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| T |
25107376 |
tacttgaaaacattaacttgcaggttactaggaacgatagatggttgtggagattggattcatcttctagttacactgttcgtagtgcctacaagttttt |
25107277 |
T |
|
| Q |
398 |
gaatga |
403 |
Q |
| |
|
|||||| |
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|
| T |
25107276 |
gaatga |
25107271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 11305 - 11353
Alignment:
| Q |
126 |
ggtggtgtgtcgtttcgggataggtttagtagattatttgagttgtcga |
174 |
Q |
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||||||||||| ||| | || |||||||| ||||||||||||||||||| |
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| T |
11305 |
ggtggtgtgtcctttagagacaggtttagcagattatttgagttgtcga |
11353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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