View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3487_high_5 (Length: 288)
Name: NF3487_high_5
Description: NF3487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3487_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 2 - 277
Target Start/End: Original strand, 47076980 - 47077256
Alignment:
| Q |
2 |
gcattcaaatgaaatgatttcatacaaactatacacagagtgttgagtacagaggaaaaaaggggatatgggaaaagaaaagaatttaccaacatagtag |
101 |
Q |
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| T |
47076980 |
gcattcaaatgaaatgatttcatacaaactatacacagagtgttgagtacagaggaaaaaaggggatatgggaaaagaaaagaatttaccaacatagtag |
47077079 |
T |
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| Q |
102 |
tacgaacgtagatgttaaaaagaagagaaggagaatctcctatcaaatctaaaacaacaaacggtgatggcaaatgaatattccatttaccccccaatgt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47077080 |
tacgaacgtagatgttaaaaagaagagaaggagaatctcctatcaaatctaaaacagcaaacggtgatggcaaatgaatattccatttaccccccaatgt |
47077179 |
T |
|
| Q |
202 |
aataacaacaatgtcacactagaaaaggtgtattcaccattttctactttctaaggg-acaacaagctaagttacag |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
47077180 |
aataacaacaatgtcacactagaaaaggtgtattcaccattttctactttctaagggaacaacaagctaagtcacag |
47077256 |
T |
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