View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3487_low_4 (Length: 342)

Name: NF3487_low_4
Description: NF3487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3487_low_4
NF3487_low_4
[»] chr4 (7 HSPs)
chr4 (1-342)||(48912453-48912794)
chr4 (82-341)||(48957955-48958214)
chr4 (215-341)||(48974062-48974188)
chr4 (46-338)||(48965104-48965396)
chr4 (213-316)||(48951185-48951288)
chr4 (247-325)||(48961267-48961345)
chr4 (46-136)||(48967233-48967323)
[»] scaffold0536 (3 HSPs)
scaffold0536 (42-342)||(6619-6919)
scaffold0536 (66-342)||(10601-10877)
scaffold0536 (213-323)||(1580-1690)
[»] chr2 (3 HSPs)
chr2 (46-323)||(13448138-13448415)
chr2 (46-317)||(13439975-13440246)
chr2 (46-305)||(13454609-13454868)
[»] chr7 (1 HSPs)
chr7 (43-327)||(3417650-3417934)
[»] chr5 (2 HSPs)
chr5 (43-233)||(28385106-28385296)
chr5 (43-323)||(12540457-12540737)
[»] chr8 (2 HSPs)
chr8 (211-323)||(12641608-12641720)
chr8 (61-160)||(12641771-12641870)
[»] chr6 (2 HSPs)
chr6 (211-317)||(12483600-12483706)
chr6 (211-323)||(12590299-12590411)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 48912794 - 48912453
Alignment:
Q  1 cttttaagataactaaccacagcttttaaattcgaaagacgtgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtc 100  Q
    |||||||||||| ||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912794 cttttaagataattaaccacagctgttaaattcgaatgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtc 48912695  T
Q  101 tgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912694 tgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgt 48912595  T
Q  201 gctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48912594 gctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcatt 48912495  T
Q  301 ggaacccctgcactaactgcctcaacagtggaattccaccca 342  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  48912494 ggaacccctgcactaactgcctcaacagtggaattccaccca 48912453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 82 - 341
Target Start/End: Original strand, 48957955 - 48958214
Alignment:
Q  82 aactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctc 181  Q
    |||||| ||||| | ||| |||||| ||||||||||||||||| ||||||||||| ||||||| |||| || ||| ||||  | |  || | ||||| |     
T  48957955 aactcttgagcacgctgtttgatttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtt 48958054  T
Q  182 tttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatg 281  Q
    | ||| ||| |||  ||   | ||| || |||||||| |||||||||||||| ||  |||| |  |||||||||||||||||||| ||||||||||||||    
T  48958055 tctcctcaaaaccgtttacacaccactctgttgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatg 48958154  T
Q  282 catcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccaccc 341  Q
    || |||||||||||||||||||||||| || ||||| ||||| |||||||| ||||||||    
T  48958155 caccggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttccaccc 48958214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 215 - 341
Target Start/End: Original strand, 48974062 - 48974188
Alignment:
Q  215 caccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcact 314  Q
    |||| |||||||| ||||| ||  ||||||| |||||||||||||| ||||| ||||||||  ||||||  |||||||||||||||||||||||||||||    
T  48974062 caccaacctccacaccaataccccgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcact 48974161  T
Q  315 aactgcctcaacagtggaattccaccc 341  Q
    ||| || || || ||||| ||||||||    
T  48974162 aacggcttccacggtggagttccaccc 48974188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 46 - 338
Target Start/End: Original strand, 48965104 - 48965396
Alignment:
Q  46 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaa 145  Q
    |||||||||| ||| ||  || |||| || || ||||||||| ||||| |   ||| |||||||||||||||||||||||||||||||||| | |||||     
T  48965104 ccaccttcttgaatggctcgtctagccttttctccaaactcttgagcacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacag 48965203  T
Q  146 ccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctg 245  Q
    ||||||| ||  |||| || |  |||| ||||||||||||  ||| ||||||    | |||||| |||||||| || ||||| ||||||||  |||| |     
T  48965204 ccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaacaccattctgttgcaccaacttccactccaatccctcgcacttc 48965303  T
Q  246 tgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattcca 338  Q
    ||||||||  || || ||||| ||||||||||||||    ||||| || ||||| |||||||| |||| ||| ||||| || ||||| |||||    
T  48965304 tgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcaccaacagcctccactgtggagttcca 48965396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 316
Target Start/End: Original strand, 48951185 - 48951288
Alignment:
Q  213 tgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgca 312  Q
    |||||| || ||||| || |||||| |||| || ||||| | |||||||||||| || || || | ||||| ||||||||||||||| ||||||||| ||    
T  48951185 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca 48951284  T
Q  313 ctaa 316  Q
    ||||    
T  48951285 ctaa 48951288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 48961267 - 48961345
Alignment:
Q  247 gttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaa 325  Q
    |||||||||||||| ||||| |||||||||||||| |  ||||| || |||||||| | |||||||||| | |||||||    
T  48961267 gttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcactaccagcctcaa 48961345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 48967233 - 48967323
Alignment:
Q  46 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 136  Q
    |||||||||| || |||  || |||| || || ||||| ||||||||| |||||||||| ||||||||||||||  || ||||||||||||    
T  48967233 ccaccttcttgaagtgctcgtgtagccttttctccaaagtctcgagcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatc 48967323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 42 - 342
Target Start/End: Complemental strand, 6919 - 6619
Alignment:
Q  42 tgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttc 141  Q
    |||||||||||||| |   ||||||||||| || |||||||||||||||||||  | | |||||||||||||||| |||||||  |||||||||| | ||    
T  6919 tgaaccaccttcttgagccgcatgtttagccttatccccaaactctcgagcatactttttgattttctcagcttcgtcaccaccatccatcaatctcctc 6820  T
Q  142 acaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgca 241  Q
    ||| ||||||||||| |||||||||  |||||||||||||| ||||||||||||||||  ||||| || | ||| || ||| |||||||||| |   |||    
T  6819 acagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcgtcgca 6720  T
Q  242 cctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccaccc 341  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  6719 cctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccaccc 6620  T
Q  342 a 342  Q
    |    
T  6619 a 6619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 66 - 342
Target Start/End: Complemental strand, 10877 - 10601
Alignment:
Q  66 tttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctc 165  Q
    |||||| || ||||||||||||||||||||| |||||||| |||||||| ||| || | |||||||||||| |||||||||||||||||||  |||||||    
T  10877 tttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatctcttcacaaccttctcaataccatccctc 10778  T
Q  166 caaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgt 265  Q
    |  |||| ||||||| | ||||||||||||  |  || ||| ||   |||||| || ||| ||||||||||  |||| || |||||||||||||||||||    
T  10777 ccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcccccccaatcccccgcacttgcgttatcaacttctcattgt 10678  T
Q  266 aaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccaccca 342  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  10677 aaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccaccca 10601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 323
Target Start/End: Complemental strand, 1690 - 1580
Alignment:
Q  213 tgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgca 312  Q
    ||||||||| ||||| ||||||||||||||||| ||||||||| | || || || ||||| || | ||| |  ||||| |||||||||||||  ||||||    
T  1690 tgcaccgacttccactccaatcccatgcacctgagttatcaacgtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgca 1591  T
Q  313 ctaactgcctc 323  Q
    ||||| |||||    
T  1590 ctaacagcctc 1580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 46 - 323
Target Start/End: Original strand, 13448138 - 13448415
Alignment:
Q  46 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaa 145  Q
    |||||||||| ||| || ||| ||||||| || ||||||||||||||| || | ||||| || |||||||||||||||| ||||||||||| | | |||     
T  13448138 ccaccttcttgaatagcttgtatagctttttctccaaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacag 13448237  T
Q  146 ccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctg 245  Q
    ||||||| ||  |||| || |  || | ||||| ||| ||| | | |||| | || | |||||| ||||||||||| || || ||||| ||  | |  ||    
T  13448238 ccttctctatgctatctctgctcactaacttctttctctccgcgacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaattg 13448337  T
Q  246 tgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctc 323  Q
    ||||||||  ||||||||||| ||||| |||||||| | ||||||||| ||||||||||| || |||||||| |||||    
T  13448338 tgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctc 13448415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 317
Target Start/End: Original strand, 13439975 - 13440246
Alignment:
Q  46 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaa 145  Q
    |||||||||| ||| || ||| |||| || || ||||||||| ||||| || | || || || | ||||||||||||| | |||||||||| | |||||     
T  13439975 ccaccttcttgaatagcttgtgtagccttttctccaaactcttgagcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacag 13440074  T
Q  146 ccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctg 245  Q
    ||||||| || |||||||| |  |||| ||||||||| ||| ||| |||| |  | | |||||||||||||||||| ||||| ||||| ||  | |  ||    
T  13440075 ccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaattcctcgaaattg 13440174  T
Q  246 tgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaac 317  Q
    ||||| ||  ||||| ||||| ||||| |||||||| | ||||||||| ||||||||||| || ||||||||    
T  13440175 tgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaac 13440246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 305
Target Start/End: Original strand, 13454609 - 13454868
Alignment:
Q  46 ccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaa 145  Q
    ||||||| || ||| || ||| |||| || || ||||||||||||||| ||   ||||| || | |||||||||||||| | ||||||||| | |||||     
T  13454609 ccacctttttgaatagcttgtgtagccttttctccaaactctcgagcacgtaccctgatatttttagcttcatcaccaccgcccatcaatctcctcacag 13454708  T
Q  146 ccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctg 245  Q
    ||||||| ||  ||||  | |  |||| ||||||||| ||| ||| |||| |||| | |||||| ||||||||||| || |  ||||| ||  | || ||    
T  13454709 ccttctctatgctatctttgctcaccaacttctctctctccgcaacaccacttgtacaccattctgttgcaccgacttcaattccaattcctcgaacttg 13454808  T
Q  246 tgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaac 305  Q
    |||||| |  ||||| ||||| ||||| |||||||| |  |||||||| |||||||||||    
T  13454809 tgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaac 13454868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 327
Target Start/End: Complemental strand, 3417934 - 3417650
Alignment:
Q  43 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 142  Q
    ||||||||||||| ||| ||  ||||||| ||||| |||| |||||||||| || |||| ||    ||||| ||||||| |||||||||||||| | |||    
T  3417934 gaaccaccttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctca 3417835  T
Q  143 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcac 242  Q
       ||||||| || | ||| || |  |||| ||||| ||| ||||||||||||  ||  | |||||| |||||||| || ||||| ||||| ||  | ||    
T  3417834 ttgccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcggac 3417735  T
Q  243 ctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaaca 327  Q
     |||||||| |  ||||||||| | ||||| ||||||||   ||||||||| ||||||||||| ||||||| ||| |||||||||    
T  3417734 ttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaaca 3417650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 43 - 233
Target Start/End: Original strand, 28385106 - 28385296
Alignment:
Q  43 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 142  Q
    ||||||||||||||||  ||  || |||| ||||| || |||||||||||| ||||||| || || ||||||||||| |||| ||||||||||  | |||    
T  28385106 gaaccaccttctttaacagctcgtgtagccttctctcctaactctcgagcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctca 28385205  T
Q  143 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaat 233  Q
     | ||||||| || ||||| || |  |||| ||||| ||| |||||| ||||| |||| | |||||||||| |||| || ||||| |||||    
T  28385206 tagccttctctatgttatctctgctcaccaacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaat 28385296  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 323
Target Start/End: Original strand, 12540457 - 12540737
Alignment:
Q  43 gaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttca 142  Q
    ||||||||||||| ||  ||  || |||| ||||| |||| |||||| ||| || |||| || || |||||||||| |||||  |||||||||| | |||    
T  12540457 gaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatctcctca 12540556  T
Q  143 caaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcac 242  Q
     | ||||||| ||   ||| || | ||||| ||||| ||| |||||| ||||| |||| | |||||| |||||||| || || || ||||| ||  | ||    
T  12540557 tagccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccattctgttgcacctacttctactccaattcctcggac 12540656  T
Q  243 ctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctc 323  Q
    ||||||||| |  ||||| ||| | || || ||||||||   ||||||||| ||||||||||| || |||| ||| |||||    
T  12540657 ctgtgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcccgcaccaacagcctc 12540737  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 12641720 - 12641608
Alignment:
Q  211 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg 310  Q
    |||||||| ||||||||||||||||   ||||    ||||||| ||||||||| || || |||||||| ||||  ||||||||||||||||||| |||||    
T  12641720 gttgcacccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctg 12641621  T
Q  311 cactaactgcctc 323  Q
    ||||||| |||||    
T  12641620 cactaacagcctc 12641608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 12641870 - 12641771
Alignment:
Q  61 gcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattat 160  Q
    |||||| |||| || | |||||||||| ||||| |||||||||||| || |||||||||||||  ||||||||||| | ||||| | ||||| ||| |||    
T  12641870 gcatgtgtagcctttttcccaaactcttgagcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctatactat 12641771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 317
Target Start/End: Complemental strand, 12483706 - 12483600
Alignment:
Q  211 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg 310  Q
    ||||||||||| ||||| ||||||||  |||| |  ||||| |  |||||||||||||| ||||| || || | |||||||||||||||||||| |||||    
T  12483706 gttgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctg 12483607  T
Q  311 cactaac 317  Q
    |||||||    
T  12483606 cactaac 12483600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 12590411 - 12590299
Alignment:
Q  211 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg 310  Q
    |||||||| || ||||| ||||| |||||||| |  ||||||||||||||||||||||| ||||| |||| ||  ||||| |||||||| ||||  || |    
T  12590411 gttgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccag 12590312  T
Q  311 cactaactgcctc 323  Q
    ||||||| |||||    
T  12590311 cactaaccgcctc 12590299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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