View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3487_low_7 (Length: 250)

Name: NF3487_low_7
Description: NF3487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3487_low_7
NF3487_low_7
[»] chr1 (10 HSPs)
chr1 (158-250)||(40981574-40981666)
chr1 (158-250)||(29836239-29836331)
chr1 (136-250)||(50290411-50290525)
chr1 (158-250)||(38240177-38240269)
chr1 (58-105)||(26452074-26452121)
chr1 (157-250)||(6919549-6919642)
chr1 (158-250)||(27843699-27843791)
chr1 (120-155)||(51382509-51382544)
chr1 (122-156)||(38509035-38509069)
chr1 (122-155)||(39183239-39183272)
[»] chr3 (11 HSPs)
chr3 (156-230)||(43399448-43399522)
chr3 (158-250)||(29129130-29129222)
chr3 (163-250)||(53689246-53689333)
chr3 (157-250)||(45458475-45458567)
chr3 (158-230)||(52126885-52126957)
chr3 (192-250)||(12812886-12812944)
chr3 (124-156)||(50719204-50719236)
chr3 (124-156)||(50793612-50793644)
chr3 (64-99)||(9195980-9196015)
chr3 (122-155)||(29157525-29157558)
chr3 (208-249)||(52311635-52311676)
[»] chr7 (13 HSPs)
chr7 (162-250)||(1971096-1971184)
chr7 (34-102)||(15515332-15515400)
chr7 (34-102)||(15840354-15840422)
chr7 (34-103)||(15846410-15846479)
chr7 (34-103)||(15855620-15855689)
chr7 (120-157)||(39262777-39262814)
chr7 (38-90)||(4435076-4435128)
chr7 (208-250)||(37362580-37362622)
chr7 (62-144)||(39739021-39739103)
chr7 (120-158)||(48844138-48844176)
chr7 (158-230)||(24759474-24759546)
chr7 (124-155)||(2440075-2440106)
chr7 (37-99)||(30432681-30432743)
[»] chr4 (25 HSPs)
chr4 (158-250)||(14210399-14210491)
chr4 (158-250)||(14211368-14211460)
chr4 (158-250)||(14212319-14212411)
chr4 (158-250)||(14213288-14213380)
chr4 (158-250)||(14214256-14214348)
chr4 (158-250)||(14215225-14215317)
chr4 (158-250)||(14218096-14218188)
chr4 (158-250)||(14219066-14219158)
chr4 (158-250)||(14220035-14220127)
chr4 (158-250)||(14220986-14221078)
chr4 (158-250)||(14221955-14222047)
chr4 (158-250)||(14209448-14209540)
chr4 (158-250)||(14216194-14216286)
chr4 (158-250)||(14217145-14217237)
chr4 (158-250)||(14222924-14223016)
chr4 (39-94)||(27070734-27070789)
chr4 (39-94)||(27150820-27150875)
chr4 (158-230)||(30176040-30176112)
chr4 (38-90)||(6745668-6745720)
chr4 (162-230)||(11214843-11214910)
chr4 (162-230)||(11225354-11225421)
chr4 (120-159)||(16030585-16030624)
chr4 (120-156)||(2304305-2304341)
chr4 (62-105)||(6895525-6895568)
chr4 (68-102)||(23009137-23009171)
[»] chr2 (13 HSPs)
chr2 (156-230)||(22145644-22145718)
chr2 (158-250)||(31409684-31409776)
chr2 (65-145)||(28928826-28928906)
chr2 (61-112)||(9535291-9535342)
chr2 (157-230)||(26449092-26449165)
chr2 (157-230)||(38403354-38403427)
chr2 (120-155)||(6673922-6673957)
chr2 (122-155)||(16970265-16970298)
chr2 (122-155)||(28003478-28003511)
chr2 (120-157)||(32286934-32286971)
chr2 (122-159)||(38943997-38944034)
chr2 (122-155)||(38993391-38993424)
chr2 (124-152)||(27534974-27535002)
[»] chr8 (11 HSPs)
chr8 (156-230)||(8022722-8022796)
chr8 (158-250)||(29729330-29729421)
chr8 (120-157)||(45239359-45239396)
chr8 (38-90)||(9490319-9490371)
chr8 (124-156)||(9885367-9885399)
chr8 (120-156)||(32721323-32721359)
chr8 (124-155)||(4970052-4970083)
chr8 (120-155)||(38684865-38684900)
chr8 (124-157)||(23830912-23830945)
chr8 (157-230)||(38681136-38681209)
chr8 (123-156)||(43418199-43418232)
[»] chr6 (10 HSPs)
chr6 (158-230)||(18645950-18646022)
chr6 (34-102)||(22817844-22817912)
chr6 (120-180)||(20910732-20910788)
chr6 (120-180)||(20925180-20925236)
chr6 (161-230)||(8840653-8840722)
chr6 (158-198)||(34008621-34008661)
chr6 (120-156)||(7018679-7018715)
chr6 (119-155)||(15298439-15298475)
chr6 (60-112)||(22790851-22790903)
chr6 (124-156)||(26846230-26846262)
[»] chr5 (7 HSPs)
chr5 (62-112)||(15814480-15814530)
chr5 (119-157)||(37340380-37340418)
chr5 (63-112)||(15730727-15730776)
chr5 (157-230)||(4077837-4077910)
chr5 (120-153)||(6702116-6702149)
chr5 (122-155)||(26113650-26113683)
chr5 (158-230)||(40946710-40946782)
[»] scaffold0192 (1 HSPs)
scaffold0192 (120-157)||(19119-19156)
[»] scaffold0188 (1 HSPs)
scaffold0188 (122-155)||(28312-28345)
[»] scaffold0790 (1 HSPs)
scaffold0790 (120-156)||(3966-4002)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 40981666 - 40981574
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  ||||||||||||||||||||||||||||||| |||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaacctacttttttggctccaatctatccagaccgttagatc 40981574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 29836239 - 29836331
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   ||| ||||||||||| || |||  ||||||||||||||||||||||||||||||  |||||||||||    
T  29836239 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatc 29836331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 50290411 - 50290525
Alignment:
Q  136 gcacgggtcggcgttctagtttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctat 235  Q
    ||||||||||  | |||||| ||||||||||||||||||||| ||   ||||||| ||||| |||| |||  |||||||| ||||||||||||||| |||    
T  50290411 gcacgggtcgatggtctagtatatcctttatatctaatcctaacaaacatgcttaacctaaattccaaaccctaaacctatttttttggctccaatttat 50290510  T
Q  236 ccaaaccgttagatc 250  Q
    ||| |||||||||||    
T  50290511 ccagaccgttagatc 50290525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 38240269 - 38240177
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||| |||||  |||||||||  | | |  ||| |||||||||||||||||| | ||||| ||||||||||||    
T  38240269 atcctttatatctaatcctagcagcaatgcaaaccctaattgtcaacctctaaccctacttttttggctccattttatcctaaccgttagatc 38240177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 26452121 - 26452074
Alignment:
Q  58 caatgacttatttaacatcaatgaaaatatataatataacttattggt 105  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||    
T  26452121 caatgacttattcaatatcaatgaaaatatataatataacttattggt 26452074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 6919549 - 6919642
Alignment:
Q  157 tatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    ||||||||||||||||||||||||| |||||  || |||||| || | |  ||| |||||||||||||||||| | ||| |  |||||||||||    
T  6919549 tatcctttatatctaatcctagcagcaatgcaaactctaattgccaacctctaaccctacttttttggctccattttattctgaccgttagatc 6919642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 27843791 - 27843699
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||| || ||  ||||||||| || | |   || |||||||||||||||||| | |||||  |||||||||||    
T  27843791 atcctttatatctaatcctagcagcaacgcaaaccctaattgccaacctccaaccctacttttttggctccattttatcctgaccgttagatc 27843699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 155
Target Start/End: Complemental strand, 51382544 - 51382509
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagt 155  Q
    ||||||||||||||||||| ||||||||||||||||    
T  51382544 ataagacccgtgcggcgcatgggtcggcgttctagt 51382509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 38509035 - 38509069
Alignment:
Q  122 aagacccgtgcggcgcacgggtcggcgttctagtt 156  Q
    |||||||||||||||||||||| ||||||||||||    
T  38509035 aagacccgtgcggcgcacgggttggcgttctagtt 38509069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 39183239 - 39183272
Alignment:
Q  122 aagacccgtgcggcgcacgggtcggcgttctagt 155  Q
    |||||||||||||||||||| |||||||||||||    
T  39183239 aagacccgtgcggcgcacggatcggcgttctagt 39183272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 43399448 - 43399522
Alignment:
Q  156 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||||||    
T  43399448 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccttaatcctaagtttttggctccaa 43399522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 29129130 - 29129222
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   ||| ||||||||||| || |||  ||||||||||||||||||||||||||||||  |||||||||||    
T  29129130 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatc 29129222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 53689246 - 53689333
Alignment:
Q  163 ttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||| |||||||||||   ||||||||||||||| || |||  ||||||||||||||||||||||||||||||  |||||||||||    
T  53689246 ttatatttaatcctagcaaacatgcttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatc 53689333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 45458567 - 45458475
Alignment:
Q  157 tatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||| ||||||| |   |||||||||||||||||| ||| ||||| ||||||||||| |||||||| ||||||| |||||||||    
T  45458567 tatcctttatatctgatcctagtaaacatgcttaccctaatttcc-aaccttaaatctacttttttgactccaatccatccaaatcgttagatc 45458475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 52126885 - 52126957
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    |||||||||||||||||||||||   ||||||||||||||||| ||||  ||| ||||  |||||||||||||    
T  52126885 atcctttatatctaatcctagcaaacatgcttaccctaatttcttaaccctaatcctaagtttttggctccaa 52126957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 12812944 - 12812886
Alignment:
Q  192 cctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||| |||   |||||||||||||| ||||||||||||||| |||||||||||    
T  12812944 cctaatttccaaaccccaaacctacttttttcgctccaatctatccagaccgttagatc 12812886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 50719204 - 50719236
Alignment:
Q  124 gacccgtgcggcgcacgggtcggcgttctagtt 156  Q
    |||||||||||||||||||||||||||||||||    
T  50719204 gacccgtgcggcgcacgggtcggcgttctagtt 50719236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 50793644 - 50793612
Alignment:
Q  124 gacccgtgcggcgcacgggtcggcgttctagtt 156  Q
    |||||||||||||||||||||||||||||||||    
T  50793644 gacccgtgcggcgcacgggtcggcgttctagtt 50793612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 9195980 - 9196015
Alignment:
Q  64 cttatttaacatcaatgaaaatatataatataactt 99  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9195980 cttatttaacatcgatgaaaatatataatataactt 9196015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 29157525 - 29157558
Alignment:
Q  122 aagacccgtgcggcgcacgggtcggcgttctagt 155  Q
    |||||||||||| |||||||||||||||||||||    
T  29157525 aagacccgtgcgccgcacgggtcggcgttctagt 29157558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 52311676 - 52311635
Alignment:
Q  208 taaacctacttttttggctccaatctatccaaaccgttagat 249  Q
    |||||||||||||||| |||||||||||||  ||||||||||    
T  52311676 taaacctacttttttgcctccaatctatcctgaccgttagat 52311635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 1971096 - 1971184
Alignment:
Q  162 tttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||   |||||||||||||||||| |||  |||| |||||||||||||||||||||||||| |||||||||||    
T  1971096 tttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaatctacttttttggctccaatctatccagaccgttagatc 1971184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 15515400 - 15515332
Alignment:
Q  34 gtttaatggtaatacaattttgtccaatgacttatttaacatcaatgaaaatatataatataacttatt 102  Q
    ||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||| ||||| ||||    
T  15515400 gtttaatggtaatacaattttttgctatgacttatttaacatcaataaaaatatataaaataacatatt 15515332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 15840354 - 15840422
Alignment:
Q  34 gtttaatggtaatacaattttgtccaatgacttatttaacatcaatgaaaatatataatataacttatt 102  Q
    ||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||| ||||| ||||    
T  15840354 gtttaatggtaatacaattttttgctatgacttatttaacatcaataaaaatatataaaataacatatt 15840422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 15846410 - 15846479
Alignment:
Q  34 gtttaatggtaatacaattttgtccaatgacttatttaacatcaatgaaaatatataatataacttattg 103  Q
    |||||| |||||||||||||| | | |||| ||||||||||||||| ||||||||||| ||||| |||||    
T  15846410 gtttaaaggtaatacaattttttgctatgatttatttaacatcaatcaaaatatataaaataacatattg 15846479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 15855620 - 15855689
Alignment:
Q  34 gtttaatggtaatacaattttgtccaatgacttatttaacatcaatgaaaatatataatataacttattg 103  Q
    |||||| |||||||||||||| | | |||| ||||||||||||||| ||||||||||| ||||| |||||    
T  15855620 gtttaaaggtaatacaattttttgctatgatttatttaacatcaatcaaaatatataaaataacatattg 15855689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 39262814 - 39262777
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagttt 157  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39262814 ataagacccgtgcggcgcacgggtcggcgttctagttt 39262777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 4435076 - 4435128
Alignment:
Q  38 aatggtaatacaattttgtccaatgacttatttaacatcaatgaaaatatata 90  Q
    ||||||||||||||||| | | |||||||||||||||||||| ||||||||||    
T  4435076 aatggtaatacaattttttaccatgacttatttaacatcaataaaaatatata 4435128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 37362622 - 37362580
Alignment:
Q  208 taaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  37362622 taaacctacttttttggctccaatctatccagatcgttagatc 37362580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 39739103 - 39739021
Alignment:
Q  62 gacttatttaacatcaatgaaaatatataatataacttattggtctttattttgatgaataagacccgtgcggcgcacgggtc 144  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||| | ||||  | |  ||| |||||||||| ||||||||||    
T  39739103 gacttatttaacaacaacgaaaatatataacataacttattggtgtctattgcgctcgataggacccgtgcgacgcacgggtc 39739021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 48844176 - 48844138
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagttta 158  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  48844176 ataagacccgtgcgacgcacgggtcggcgttctagttta 48844138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 24759474 - 24759546
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    |||||||||||||||||||||||   ||| ||||||||||||| ||||  ||| ||||  |||||||||||||    
T  24759474 atcctttatatctaatcctagcaaacatgtttaccctaatttcttaaccctaatcctaagtttttggctccaa 24759546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 155
Target Start/End: Original strand, 2440075 - 2440106
Alignment:
Q  124 gacccgtgcggcgcacgggtcggcgttctagt 155  Q
    ||||||||||||||||||||||||||||||||    
T  2440075 gacccgtgcggcgcacgggtcggcgttctagt 2440106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 30432743 - 30432681
Alignment:
Q  37 taatggtaatacaattttgtccaatgacttatttaacatcaatgaaaatatataatataactt 99  Q
    ||||||||||| || ||| ||| ||||||||||||||||||| | ||||| ||||| ||||||    
T  30432743 taatggtaatataaatttttcctatgacttatttaacatcaagggaaataaataatttaactt 30432681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14210491 - 14210399
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14210491 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14210399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14211460 - 14211368
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14211460 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14211368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14212411 - 14212319
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14212411 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14212319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14213380 - 14213288
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14213380 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14213288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14214348 - 14214256
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14214348 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14214256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14215317 - 14215225
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14215317 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14215225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14218188 - 14218096
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14218188 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14218096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14219158 - 14219066
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14219158 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14219066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14220127 - 14220035
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14220127 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14220035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14221078 - 14220986
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14221078 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14220986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14222047 - 14221955
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14222047 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14221955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14209540 - 14209448
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    ||||||||||||||||| |||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14209540 atcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14209448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14216286 - 14216194
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    ||||||||||| |||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14216286 atcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14216194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14217237 - 14217145
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    ||||||||||||||||| |||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  14217237 atcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 14217145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 14223016 - 14222924
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| ||| |||||||    
T  14223016 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccattagatc 14222924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 27070734 - 27070789
Alignment:
Q  39 atggtaatacaattttgtccaatgacttatttaacatcaatgaaaatatataatat 94  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27070734 atggtaatacaattttgtcctatgacttatttaacatcaatgaaaatatataatat 27070789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 27150820 - 27150875
Alignment:
Q  39 atggtaatacaattttgtccaatgacttatttaacatcaatgaaaatatataatat 94  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27150820 atggtaatacaattttgtcctatgacttatttaacatcaatgaaaatatataatat 27150875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 30176040 - 30176112
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||  ||| ||||  |||||||||||||    
T  30176040 atcctttatatttaatcctagcagtaatgcttaccctaattttctaaccctaatcctaagtttttggctccaa 30176112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 6745668 - 6745720
Alignment:
Q  38 aatggtaatacaattttgtccaatgacttatttaacatcaatgaaaatatata 90  Q
    ||||||||||||||||| | | |||||||||||||||||||| ||||||||||    
T  6745668 aatggtaatacaattttttaccatgacttatttaacatcaataaaaatatata 6745720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 11214843 - 11214910
Alignment:
Q  162 tttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||  ||| ||||  |||||||||||||    
T  11214843 tttatatctaatcctagcagtgatgcttaccctaatttcttaaccctaatccta-atttttggctccaa 11214910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 11225354 - 11225421
Alignment:
Q  162 tttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||  ||| ||||  |||||||||||||    
T  11225354 tttatatctaatcctagcagtgatgcttaccctaatttcttaaccctaatccta-atttttggctccaa 11225421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 16030624 - 16030585
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagtttat 159  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  16030624 ataagacccgtgcggcgcacgggtcggtgttctagtttat 16030585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 2304305 - 2304341
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagtt 156  Q
    ||||||||| |||||||||||||||||||||||||||    
T  2304305 ataagacccatgcggcgcacgggtcggcgttctagtt 2304341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 6895568 - 6895525
Alignment:
Q  62 gacttatttaacatcaatgaaaatatataatataacttattggt 105  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||    
T  6895568 gacttatttaacaacaatgaaaatatataacataatttattggt 6895525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 23009171 - 23009137
Alignment:
Q  68 tttaacatcaatgaaaatatataatataacttatt 102  Q
    ||||||| |||||||||||||||||||||||||||    
T  23009171 tttaacaccaatgaaaatatataatataacttatt 23009137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 22145718 - 22145644
Alignment:
Q  156 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||  |||||||||||||    
T  22145718 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccctaatcctaagtttttggctccaa 22145644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 31409776 - 31409684
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    ||||||||||| |||||||||||   |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||    
T  31409776 atcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatc 31409684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 28928826 - 28928906
Alignment:
Q  65 ttatttaacatcaatgaaaatatataatataacttattggtctttattttgatgaataagacccgtgcggcgcacgggtcg 145  Q
    |||||||||||||||  |||||||||||||||||||||| |||||||||   |  ||||||||||||||| ||||||||||    
T  28928826 ttatttaacatcaatagaaatatataatataacttattgatctttatttaagtcgataagacccgtgcggagcacgggtcg 28928906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 9535342 - 9535291
Alignment:
Q  61 tgacttatttaacatcaatgaaaatatataatataacttattggtctttatt 112  Q
    ||||||||||||||||||   ||||||||||||||| |||||||||||||||    
T  9535342 tgacttatttaacatcaacataaatatataatataatttattggtctttatt 9535291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 26449092 - 26449165
Alignment:
Q  157 tatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    ||||||||||||||||||||||||   ||||||||||||||| || |||  |||  ||| ||||||||||||||    
T  26449092 tatcctttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaattctaattttttggctccaa 26449165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 38403354 - 38403427
Alignment:
Q  157 tatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    ||||||||||||||||||||||||| |||||  |||||| || || |||  ||| |||| ||||||||||||||    
T  38403354 tatcctttatatctaatcctagcagcaatgcaaaccctatttgccaaaccctaatcctaattttttggctccaa 38403427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 6673922 - 6673957
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagt 155  Q
    |||||||||||||||||||||||||||| |||||||    
T  6673922 ataagacccgtgcggcgcacgggtcggccttctagt 6673957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 16970265 - 16970298
Alignment:
Q  122 aagacccgtgcggcgcacgggtcggcgttctagt 155  Q
    |||||||||||| |||||||||||||||||||||    
T  16970265 aagacccgtgcgacgcacgggtcggcgttctagt 16970298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 28003478 - 28003511
Alignment:
Q  122 aagacccgtgcggcgcacgggtcggcgttctagt 155  Q
    ||||||||||||||||| ||||||||||||||||    
T  28003478 aagacccgtgcggcgcaagggtcggcgttctagt 28003511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 32286934 - 32286971
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagttt 157  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  32286934 ataagacccgtgcggcgcacgggtcggctatctagttt 32286971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 38944034 - 38943997
Alignment:
Q  122 aagacccgtgcggcgcacgggtcggcgttctagtttat 159  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  38944034 aagacctgtgcggcgcacgggtcggcgatctagtttat 38943997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 38993424 - 38993391
Alignment:
Q  122 aagacccgtgcggcgcacgggtcggcgttctagt 155  Q
    ||||||||||||||||||||||| ||||||||||    
T  38993424 aagacccgtgcggcgcacgggtcagcgttctagt 38993391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 27534974 - 27535002
Alignment:
Q  124 gacccgtgcggcgcacgggtcggcgttct 152  Q
    |||||||||||||||||||||||||||||    
T  27534974 gacccgtgcggcgcacgggtcggcgttct 27535002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 8022722 - 8022796
Alignment:
Q  156 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||  ||| ||||  |||||||||||||    
T  8022722 ttatcctttatatctaatcctagcagtaatgtttaccctaatttcctaaccctaatcctaagtttttggctccaa 8022796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 29729421 - 29729330
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatc 250  Q
    ||||||||||| |||||| |||| || |||||||||||||| || ||| ||||||||| |||||||||||||||| ||||| ||| |||||||    
T  29729421 atcctttatatttaatccaagcaata-tgcttaccctaattgccaaaccttaaacctaattttttggctccaatcaatccagaccattagatc 29729330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 45239396 - 45239359
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagttt 157  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45239396 ataagacccgtgcggcgcacgggtcggcgttctagttt 45239359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 9490319 - 9490371
Alignment:
Q  38 aatggtaatacaattttgtccaatgacttatttaacatcaatgaaaatatata 90  Q
    ||||||||||||||||| | | |||||||||||||||||||| ||||||||||    
T  9490319 aatggtaatacaattttttaccatgacttatttaacatcaataaaaatatata 9490371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 9885399 - 9885367
Alignment:
Q  124 gacccgtgcggcgcacgggtcggcgttctagtt 156  Q
    |||||||||||||||||||||||||||||||||    
T  9885399 gacccgtgcggcgcacgggtcggcgttctagtt 9885367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 32721323 - 32721359
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagtt 156  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32721323 ataagacctgtgcggcgcacgggtcggcgttctagtt 32721359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 155
Target Start/End: Original strand, 4970052 - 4970083
Alignment:
Q  124 gacccgtgcggcgcacgggtcggcgttctagt 155  Q
    ||||||||||||||||||||||||||||||||    
T  4970052 gacccgtgcggcgcacgggtcggcgttctagt 4970083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 38684865 - 38684900
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagt 155  Q
    ||||||||||||||||||||||||||||| ||||||    
T  38684865 ataagacccgtgcggcgcacgggtcggcgatctagt 38684900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 23830912 - 23830945
Alignment:
Q  124 gacccgtgcggcgcacgggtcggcgttctagttt 157  Q
    |||||||||| |||||||||||||||||||||||    
T  23830912 gacccgtgcgacgcacgggtcggcgttctagttt 23830945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 38681136 - 38681209
Alignment:
Q  157 tatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    ||||||||||||||||||||||||   |||||||||||| || |  |||  ||| |||| ||||||||||||||    
T  38681136 tatcctttatatctaatcctagcaaacatgcttaccctatttgctaaaccctaatcctaattttttggctccaa 38681209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 43418232 - 43418199
Alignment:
Q  123 agacccgtgcggcgcacgggtcggcgttctagtt 156  Q
    ||||| ||||||||||||||||||||||||||||    
T  43418232 agacctgtgcggcgcacgggtcggcgttctagtt 43418199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 18645950 - 18646022
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||  ||| ||||  |||||||||||||    
T  18645950 atcctttatatctaatcctagcagtaatgtttaccctaatttcttaaccctaatcctaagtttttggctccaa 18646022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 22817912 - 22817844
Alignment:
Q  34 gtttaatggtaatacaattttgtccaatgacttatttaacatcaatgaaaatatataatataacttatt 102  Q
    |||||||||||||| |||||| ||  || | |||||||||||||||||||| |||||||||||||||||    
T  22817912 gtttaatggtaatataattttttcatataaattatttaacatcaatgaaaacatataatataacttatt 22817844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 20910788 - 20910732
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagtttatcctttatatctaatcctagca 180  Q
    |||||||||||||||||||||||||||||||||||    || |||||||||||||||||||    
T  20910788 ataagacccgtgcggcgcacgggtcggcgttctag----tcttttatatctaatcctagca 20910732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 20925236 - 20925180
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagtttatcctttatatctaatcctagca 180  Q
    |||||||||||||||||||||||||||||||||||    || |||||||||||||||||||    
T  20925236 ataagacccgtgcggcgcacgggtcggcgttctag----tcttttatatctaatcctagca 20925180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 8840653 - 8840722
Alignment:
Q  161 ctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    ||||||||||||||||||||   ||||||||||||||| || ||| ||||||||| ||||| ||||||||    
T  8840653 ctttatatctaatcctagcaaacatgcttaccctaattgccaaaccttaaacctattttttcggctccaa 8840722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 34008621 - 34008661
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatt 198  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  34008621 atcctttatatttaatcctagcagtaatgcttaccctaatt 34008661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 7018679 - 7018715
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagtt 156  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  7018679 ataagacccatgcggcgcacgggtcgacgttctagtt 7018715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 15298439 - 15298475
Alignment:
Q  119 aataagacccgtgcggcgcacgggtcggcgttctagt 155  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  15298439 aataagacctgtgcggcgcacggatcggcgttctagt 15298475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 22790903 - 22790851
Alignment:
Q  60 atgacttatttaacatcaatgaaaatatataatataacttattggtctttatt 112  Q
    |||| |||||||||||||||   |||||||||||||| |||||| ||||||||    
T  22790903 atgagttatttaacatcaatagtaatatataatataatttattgatctttatt 22790851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 26846230 - 26846262
Alignment:
Q  124 gacccgtgcggcgcacgggtcggcgttctagtt 156  Q
    ||||||||||| |||||||||||||||||||||    
T  26846230 gacccgtgcggtgcacgggtcggcgttctagtt 26846262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 15814530 - 15814480
Alignment:
Q  62 gacttatttaacatcaatgaaaatatataatataacttattggtctttatt 112  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||||||||    
T  15814530 gacttatttaacatcaataaaaatagataatctaacttattggtctttatt 15814480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 37340380 - 37340418
Alignment:
Q  119 aataagacccgtgcggcgcacgggtcggcgttctagttt 157  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  37340380 aataagacccgtgcggggcacgggtcggcgttctagttt 37340418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 15730776 - 15730727
Alignment:
Q  63 acttatttaacatcaatgaaaatatataatataacttattggtctttatt 112  Q
    ||||||||| |||||||||||||| ||||||||| |||||| ||||||||    
T  15730776 acttatttatcatcaatgaaaatagataatataatttattgatctttatt 15730727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 4077837 - 4077910
Alignment:
Q  157 tatcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    ||||||||||||||||||||||||   ||||||| ||||||| || |||  ||| |||  ||||||||||||||    
T  4077837 tatcctttatatctaatcctagcaaacatgcttatcctaattgccaaaccctaatccttattttttggctccaa 4077910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 6702116 - 6702149
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttcta 153  Q
    ||||||||||||||| ||||||||||||||||||    
T  6702116 ataagacccgtgcggtgcacgggtcggcgttcta 6702149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 26113650 - 26113683
Alignment:
Q  122 aagacccgtgcggcgcacgggtcggcgttctagt 155  Q
    ||||||||||||||||||||||| ||||||||||    
T  26113650 aagacccgtgcggcgcacgggtcagcgttctagt 26113683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 40946710 - 40946782
Alignment:
Q  158 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaacattaaacctacttttttggctccaa 230  Q
    |||||||||||||||||||||||   ||| ||||||||||| || |||  ||| | || ||||||||||||||    
T  40946710 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaatcttaattttttggctccaa 40946782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 19156 - 19119
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagttt 157  Q
    |||||||||||||||||||||| |||||||||||||||    
T  19156 ataagacccgtgcggcgcacggatcggcgttctagttt 19119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 28345 - 28312
Alignment:
Q  122 aagacccgtgcggcgcacgggtcggcgttctagt 155  Q
    ||||||||||||||||||||||||||||||||||    
T  28345 aagacccgtgcggcgcacgggtcggcgttctagt 28312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 3966 - 4002
Alignment:
Q  120 ataagacccgtgcggcgcacgggtcggcgttctagtt 156  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3966 ataagacccgtgcggcgcacgggtcggcgatctagtt 4002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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