View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3488_high_10 (Length: 448)

Name: NF3488_high_10
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3488_high_10
NF3488_high_10
[»] chr4 (18 HSPs)
chr4 (1-179)||(4605792-4605967)
chr4 (1-54)||(26872038-26872091)
chr4 (1-54)||(41144737-41144790)
chr4 (1-69)||(6028629-6028697)
chr4 (1-69)||(24670081-24670149)
chr4 (5-128)||(28704043-28704167)
chr4 (17-95)||(6484696-6484774)
chr4 (1-54)||(8151028-8151081)
chr4 (1-54)||(10262438-10262491)
chr4 (1-54)||(13860145-13860198)
chr4 (1-54)||(21561964-21562017)
chr4 (1-54)||(24080509-24080562)
chr4 (3-64)||(25881839-25881900)
chr4 (1-54)||(41105329-41105382)
chr4 (1-54)||(41986718-41986771)
chr4 (1-54)||(43329485-43329538)
chr4 (1-54)||(51449551-51449604)
chr4 (2-54)||(16891143-16891195)
[»] chr2 (7 HSPs)
chr2 (2-124)||(41860288-41860409)
chr2 (3-122)||(3752487-3752606)
chr2 (23-124)||(29750408-29750508)
chr2 (1-54)||(668492-668545)
chr2 (1-54)||(3708032-3708085)
chr2 (1-54)||(11869331-11869384)
chr2 (1-54)||(35360724-35360777)
[»] chr7 (15 HSPs)
chr7 (20-121)||(39990594-39990695)
chr7 (1-54)||(38436279-38436332)
chr7 (1-89)||(32358828-32358916)
chr7 (1-32)||(4094304-4094335)
chr7 (1-54)||(4614721-4614774)
chr7 (1-54)||(19036771-19036824)
chr7 (1-54)||(20135560-20135613)
chr7 (1-54)||(20717812-20717865)
chr7 (1-54)||(20762493-20762546)
chr7 (1-54)||(29488059-29488112)
chr7 (1-54)||(33233066-33233119)
chr7 (1-54)||(34285208-34285261)
chr7 (1-54)||(35910101-35910154)
chr7 (1-89)||(1292089-1292177)
chr7 (1-53)||(42829453-42829505)
[»] chr5 (10 HSPs)
chr5 (1-66)||(3213655-3213720)
chr5 (1-124)||(35695198-35695321)
chr5 (1-54)||(9699583-9699636)
chr5 (1-68)||(29663396-29663463)
chr5 (1-54)||(2000866-2000919)
chr5 (1-54)||(2529906-2529959)
chr5 (1-54)||(10042617-10042670)
chr5 (1-54)||(18041631-18041684)
chr5 (1-66)||(28400341-28400406)
chr5 (1-54)||(37461450-37461503)
[»] chr8 (11 HSPs)
chr8 (44-124)||(36067824-36067904)
chr8 (1-54)||(39443246-39443299)
chr8 (1-54)||(41904355-41904408)
chr8 (1-124)||(8082801-8082925)
chr8 (1-52)||(34997242-34997293)
chr8 (1-54)||(11924120-11924173)
chr8 (1-54)||(20666032-20666085)
chr8 (1-54)||(30551394-30551447)
chr8 (1-54)||(36059474-36059527)
chr8 (1-54)||(40048867-40048920)
chr8 (1-54)||(44216144-44216197)
[»] chr6 (6 HSPs)
chr6 (20-112)||(33803914-33804006)
chr6 (1-114)||(13704044-13704158)
chr6 (1-54)||(246998-247051)
chr6 (1-54)||(3054361-3054414)
chr6 (1-54)||(12582898-12582951)
chr6 (1-54)||(34318767-34318820)
[»] scaffold0669 (1 HSPs)
scaffold0669 (1-54)||(7358-7411)
[»] chr3 (7 HSPs)
chr3 (1-54)||(54796479-54796532)
chr3 (51-118)||(44803164-44803231)
chr3 (1-54)||(915856-915909)
chr3 (1-54)||(10617011-10617064)
chr3 (1-54)||(20996530-20996583)
chr3 (1-54)||(44075825-44075878)
chr3 (1-54)||(54113173-54113226)
[»] chr1 (5 HSPs)
chr1 (1-54)||(11606821-11606874)
chr1 (1-54)||(28569195-28569248)
chr1 (1-117)||(6295054-6295170)
chr1 (1-54)||(44821041-44821094)
chr1 (57-136)||(11035781-11035860)
[»] scaffold1793 (1 HSPs)
scaffold1793 (1-54)||(574-627)
[»] scaffold0244 (1 HSPs)
scaffold0244 (1-54)||(16721-16774)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 4605792 - 4605967
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaagagtcaattca 100  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4605792 tataatataaattat---atttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaagcgtacacttggaagtgaaagagtcaattca 4605888  T
Q  101 aaaccatgtattctctttatatattataatatagattaaacttgtctccccatataacatgtaaggtggattacatatg 179  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4605889 aaaccatgtattctctttatatattatagtatagattaaacttgtctccccatataacatgtaaggtggattacatatg 4605967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26872091 - 26872038
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | ||||||||||| |||| ||||||||||| |||||||||    
T  26872091 tataatataaattcttatatttttgaaagacacaaaaaatatggtattcttata 26872038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41144790 - 41144737
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | |||||||| ||||||| ||||||||||| |||||||||    
T  41144790 tataatataaattcttatatttttaaatgacacaaaaaatatggtattcttata 41144737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6028629 - 6028697
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaa 69  Q
    ||||||||||||| | || ||||| |||||||  |||||||| |||||||| |||| ||||||||||||    
T  6028629 tataatataaattcttatcttttttaatgacaccaaaaatatagcattcttgtatgaaaatttgtttaa 6028697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24670149 - 24670081
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaa 69  Q
    ||||||||||||| | || ||||| ||| |||||||||||||  ||||||||||  |||||||||||||    
T  24670149 tataatataaattcttatctttttaaataacataaaaaatataacattcttatagacaaatttgtttaa 24670081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 28704043 - 28704167
Alignment:
Q  5 atataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaattt-gtttaaccgtacacttggaagtgaaagagtcaattcaaaa 103  Q
    ||||||||| |||| ||||| |||||||  || ||||| ||||||||||| | |||||| ||||||  ||| | || ||||||| | |||   | |||||    
T  28704043 atataaattctcatcttttttaatgacaccaacaatatagcattcttataagtaaattttgtttaagggtatatttagaagtgacaaagttggtccaaaa 28704142  T
Q  104 ccatgtattctctttatatattata 128  Q
    | |||||||||||||||||||||||    
T  28704143 ctatgtattctctttatatattata 28704167  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 6484774 - 6484696
Alignment:
Q  17 atatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaagagtca 95  Q
    ||||||||||||||||  || |||||   ||| ||||||||||||||||||||  ||| | |||||||||||| |||||    
T  6484774 atatttttgaatgacaccaataatatataattattatatgcaaatttgtttaagggtataattggaagtgaaaaagtca 6484696  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8151028 - 8151081
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || ||||| ||||||||||||||||||  |||||||||    
T  8151028 tataatataaattcttatctttttaaatgacataaaaaatatgatattcttata 8151081  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10262491 - 10262438
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  10262491 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 10262438  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13860145 - 13860198
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || ||||| ||||||| ||||||||||| |||||||||    
T  13860145 tataatataaattcttatcttttttaatgacacaaaaaatatggtattcttata 13860198  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21561964 - 21562017
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  21561964 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 21562017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24080562 - 24080509
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  24080562 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 24080509  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 25881839 - 25881900
Alignment:
Q  3 taatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttg 64  Q
    ||||||||||| | || |||||||||||||| |||||||| | |||||||||  ||||||||    
T  25881839 taatataaattcttatctttttgaatgacatgaaaaatatagtattcttataaccaaatttg 25881900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41105382 - 41105329
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    |||||||| |||| | |||||||| ||||||| ||||||||||| |||||||||    
T  41105382 tataatatgaattcttatatttttaaatgacacaaaaaatatggtattcttata 41105329  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41986771 - 41986718
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  41986771 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 41986718  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43329485 - 43329538
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  43329485 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 43329538  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 51449551 - 51449604
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  51449551 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 51449604  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 16891143 - 16891195
Alignment:
Q  2 ataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    |||||||||||| | || |||||||| | |||||||||||||| |||||||||    
T  16891143 ataatataaattcttatctttttgaaagtcataaaaaatatggtattcttata 16891195  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 41860288 - 41860409
Alignment:
Q  2 ataatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaagagtcaattcaa 101  Q
    |||||||||||| | || ||||| || ||||| || ||||| |||||||||||||||||||| | |||  ||| | ||| |||||||| |||||  | ||    
T  41860288 ataatataaattcttatctttttaaaggacatcaacaatatagcattcttatatgcaaatttatataaaggtataattgtaagtgaaaaagtcaggt-aa 41860386  T
Q  102 aaccatgtattctctttatatat 124  Q
    |||||||||||||||||||||||    
T  41860387 aaccatgtattctctttatatat 41860409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 3752487 - 3752606
Alignment:
Q  3 taatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaagagtcaattcaaa 102  Q
    ||||||||||| | || ||||| |||||||| || ||| | | ||||||||| | ||||||||||||  ||||| |||||||| ||| | |||| |||||    
T  3752487 taatataaattcttatctttttaaatgacatcaacaatgtagtattcttataagaaaatttgtttaaaagtacagttggaagtaaaaaaatcaactcaaa 3752586  T
Q  103 accatgtattctctttatat 122  Q
    | ||||||||| ||||||||    
T  3752587 atcatgtattccctttatat 3752606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 29750408 - 29750508
Alignment:
Q  23 ttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaagagtcaattcaaaaccatgtattctctttatat 122  Q
    |||||||| |||||||||||  |||| ||||| |||||||| |||||  ||| | |||||||||||| || |||  | ||||||||||||||| ||||||    
T  29750408 ttgaatgagataaaaaatataacattattataggcaaatttatttaagggtaaaattggaagtgaaaaagccaa-cccaaaccatgtattctcattatat 29750506  T
Q  123 at 124  Q
    ||    
T  29750507 at 29750508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 668545 - 668492
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || ||||| ||||||| ||||||||||| |||||||||    
T  668545 tataatataaattcttatctttttaaatgacacaaaaaatatggtattcttata 668492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3708032 - 3708085
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  3708032 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 3708085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11869384 - 11869331
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  11869384 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 11869331  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35360777 - 35360724
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  35360777 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 35360724  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 39990594 - 39990695
Alignment:
Q  20 tttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaagagtcaattcaaaaccatgtattctcttta 119  Q
    ||||| ||||||||||| |||||| |||||||||| |||||||| |||||  ||| |  || |||||||| || || ||||||||||||||||  |||||    
T  39990594 tttttaaatgacataaacaatatgacattcttataggcaaatttatttaagggtataactgaaagtgaaaaagccacttcaaaaccatgtatttccttta 39990693  T
Q  120 ta 121  Q
    ||    
T  39990694 ta 39990695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38436332 - 38436279
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | ||||||||||| |||| ||||||||||| |||||||||    
T  38436332 tataatataaattcttatatttttgaaagacacaaaaaatatggtattcttata 38436279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 32358916 - 32358828
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaa 89  Q
    ||||||||||||| | || ||||| |||||||  ||||||||  |||| |||||||||||||||||||   ||| | ||||||||||||    
T  32358916 tataatataaattcttatctttttcaatgacaacaaaaatataacatttttatatgcaaatttgtttaggtgtataattggaagtgaaa 32358828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 4094304 - 4094335
Alignment:
Q  1 tataatataaattatcatatttttgaatgaca 32  Q
    ||||||||||||||||||||||||||||||||    
T  4094304 tataatataaattatcatatttttgaatgaca 4094335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4614721 - 4614774
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | |||||||||| |||||  |||||||||| |||||||||    
T  4614721 tataatataaattcttatatttttgactgacactaaaaatatggtattcttata 4614774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19036824 - 19036771
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  19036824 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 19036771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20135613 - 20135560
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||||||||  |||||||||| |||||||||    
T  20135613 tataatataaattcttatctttttgaatgacactaaaaatatggtattcttata 20135560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20717812 - 20717865
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  20717812 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 20717865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20762493 - 20762546
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  20762493 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 20762546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29488059 - 29488112
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  29488059 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 29488112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33233119 - 33233066
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  33233119 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 33233066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34285261 - 34285208
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  34285261 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 34285208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 35910101 - 35910154
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || ||||| |||||||| |||||||||| |||||||||    
T  35910101 tataatataaattcttatctttttaaatgacatcaaaaatatggtattcttata 35910154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 1292089 - 1292177
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaa 89  Q
    ||||||||||||| | || ||||| |||||||  || ||||| ||||||||||| | ||||||||| ||  ||| | ||||||||||||    
T  1292089 tataatataaattcttatcttttttaatgacaccaacaatatagcattcttataagtaaatttgttaaagagtataattggaagtgaaa 1292177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42829505 - 42829453
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttat 53  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| ||||||||    
T  42829505 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttat 42829453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3213720 - 3213655
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtt 66  Q
    ||||||||||||| | ||||||||||| |||| ||||||||||| ||||||||||  |||||||||    
T  3213720 tataatataaattcttatatttttgaaagacacaaaaaatatggtattcttatatcaaaatttgtt 3213655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 35695321 - 35695198
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaagagtcaattca 100  Q
    |||||||||||||   || |||||||||| ||  |  ||||| ||||||||||||||||||||||||||  ||| | |||||||||||| || ||   ||    
T  35695321 tataatataaatttatatctttttgaatggcaccagcaatatagcattcttatatgcaaatttgtttaagggtataattggaagtgaaaaagccagccca 35695222  T
Q  101 aaaccatgtattctctttatatat 124  Q
    ||||||| ||||  ||||||||||    
T  35695221 aaaccatatatttcctttatatat 35695198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9699583 - 9699636
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | ||||||||||| |||| ||||||||||| |||||||||    
T  9699583 tataatataaattcttatatttttgaaagacacaaaaaatatggtattcttata 9699636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29663463 - 29663396
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgttta 68  Q
    ||||||||||||||| || ||||| |||||||  || ||||| |||||||||||  ||||||||||||    
T  29663463 tataatataaattataatcttttttaatgacagcaataatatagcattcttatacacaaatttgttta 29663396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2000919 - 2000866
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    |||||||| |||| | || |||||||||||||| |||||||||| |||||||||    
T  2000919 tataatatgaattcttatctttttgaatgacatcaaaaatatggtattcttata 2000866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2529906 - 2529959
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | |||||||| |||||||  |||||||||| |||||||||    
T  2529906 tataatataaattcttatatttttaaatgacactaaaaatatggtattcttata 2529959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10042617 - 10042670
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || ||||| ||||||| ||||||||||| |||||||||    
T  10042617 tataatataaattcttatctttttaaatgacacaaaaaatatggtattcttata 10042670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 18041684 - 18041631
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| || ||||||||||||| |||||||||    
T  18041684 tataatataaattcttatctttttgaaagatataaaaaatatggtattcttata 18041631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28400406 - 28400341
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtt 66  Q
    ||||||||||||| | || ||||||||| ||| ||||||||| | |||||||||  ||||||||||    
T  28400406 tataatataaattcttatctttttgaatcacacaaaaaatatagaattcttataaccaaatttgtt 28400341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37461450 - 37461503
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  37461450 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 37461503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 36067904 - 36067824
Alignment:
Q  44 gcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaagagtcaattcaaaaccatgtattctctttatatat 124  Q
    |||||||||||   ||||||||||||||||| | ||  |||||| | ||||||  ||||||||||||||||||||||||||    
T  36067904 gcattcttatagttaaatttgtttaaccgtataatttaaagtgatatagtcaacccaaaaccatgtattctctttatatat 36067824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39443246 - 39443299
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | ||||||||||| |||| ||||||||||| |||||||||    
T  39443246 tataatataaattcttatatttttgaaagacacaaaaaatatggtattcttata 39443299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41904355 - 41904408
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | ||||||||||| |||| ||||||||||| |||||||||    
T  41904355 tataatataaattcttatatttttgaaagacacaaaaaatatggtattcttata 41904408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 8082801 - 8082925
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaagagtcaattca 100  Q
    ||||||| ||||| | || |||||||||||||  ||||||||  |||| ||||||| |||||||||||   ||| | ||| |||||||| |||||   ||    
T  8082801 tataatagaaatttttatctttttgaatgacaacaaaaatataacatttttatatgtaaatttgtttatgggtataattgaaagtgaaaaagtcatccca 8082900  T
Q  101 aaa-ccatgtattctctttatatat 124  Q
    ||| | |||||||||||||||||||    
T  8082901 aaatcaatgtattctctttatatat 8082925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34997242 - 34997293
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattctta 52  Q
    ||||||||||||| | |||||||| |||||||| |||||||||| |||||||    
T  34997242 tataatataaattcttatatttttaaatgacatcaaaaatatggtattctta 34997293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11924120 - 11924173
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || ||||||| |||||| |||||||||| |||||||||    
T  11924120 tataatataaattcttatctttttgactgacattaaaaatatggtattcttata 11924173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20666085 - 20666032
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  20666085 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 20666032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30551447 - 30551394
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  30551447 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 30551394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36059527 - 36059474
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || ||||| ||||||| ||||||||||| |||||||||    
T  36059527 tataatataaattcttatctttttaaatgacacaaaaaatatggtattcttata 36059474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40048920 - 40048867
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || ||||| ||||||| ||||||||||| |||||||||    
T  40048920 tataatataaattcttatctttttaaatgacacaaaaaatatggtattcttata 40048867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 44216197 - 44216144
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  44216197 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 44216144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 33803914 - 33804006
Alignment:
Q  20 tttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaagagtcaattcaaaaccatgtatt 112  Q
    ||||| |||||||  || ||||| ||||||||||||||| ||||| ||||  ||| | ||| |||||||||||||||||||||| ||| ||||    
T  33803914 ttttttaatgacaccaacaatatagcattcttatatgcatatttgattaagggtataattgaaagtgaaagagtcaattcaaaatcatatatt 33804006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 13704044 - 13704158
Alignment:
Q  1 tataatataaattatc-atatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaagagtcaattc 99  Q
    ||||||||||||| |  |||||||||||| |||| || ||| ||||||||||||| | |||||||||||   ||| | | |||||||||| || ||| |     
T  13704044 tataatataaattttttatatttttgaataacatcaacaatgtggcattcttataggaaaatttgtttagtggtataatcggaagtgaaaaaggcaactt 13704143  T
Q  100 aaaaccatgtattct 114  Q
    |||||||| ||||||    
T  13704144 aaaaccatatattct 13704158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 246998 - 247051
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  246998 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 247051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3054414 - 3054361
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | ||||||||||| || || |||||||||| |||||||||    
T  3054414 tataatataaattcttatatttttgaaagatatcaaaaatatggtattcttata 3054361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12582951 - 12582898
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  12582951 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 12582898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34318767 - 34318820
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||||||||||||||  |||||||||    
T  34318767 tataatataaattcttatctttttgaaagacataaaaaatatgatattcttata 34318820  T

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Target: scaffold0669 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7411 - 7358
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | ||||||||||| |||| ||||||||||| |||||||||    
T  7411 tataatataaattcttatatttttgaaagacacaaaaaatatggtattcttata 7358  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 54796532 - 54796479
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | ||||||||||||||||  |||||||||| |||||||||    
T  54796532 tataatataaatttttatatttttgaatgacaccaaaaatatggtattcttata 54796479  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 44803164 - 44803231
Alignment:
Q  51 tatatgcaaatttgtttaaccgtacacttggaagtgaaagagtcaattcaaaaccatgtattctcttt 118  Q
    ||||||||| |||||||||  ||| | |||||||||||| |||| |||||||| |||||| |||||||    
T  44803164 tatatgcaattttgtttaaatgtataattggaagtgaaaaagtctattcaaaatcatgtaatctcttt 44803231  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 915856 - 915909
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  915856 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 915909  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10617011 - 10617064
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||||||||  |||||||||| |||||||||    
T  10617011 tataatataaattcttatctttttgaatgacaccaaaaatatggtattcttata 10617064  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20996583 - 20996530
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | |||||||| |||||||| |||||||||  |||||||||    
T  20996583 tataatataaattcttatatttttaaatgacatcaaaaatatgatattcttata 20996530  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 44075878 - 44075825
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||| |||| ||||||||||| |||||||||    
T  44075878 tataatataaattcttatctttttgaaagacacaaaaaatatggtattcttata 44075825  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 54113173 - 54113226
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || ||||  ||||||||||||||||||| |||||||||    
T  54113173 tataatataaattcttatcttttcaaatgacataaaaaatatggtattcttata 54113226  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11606874 - 11606821
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || ||||||||||||| ||||||||||| |||||||||    
T  11606874 tataatataaattcttatctttttgaatgacacaaaaaatatggtattcttata 11606821  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28569248 - 28569195
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | |||||||| |||||||| |||||||||| |||||||||    
T  28569248 tataatataaattcttatatttttaaatgacatcaaaaatatggtattcttata 28569195  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 6295054 - 6295170
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttatatgcaaatttgtttaaccgtacacttggaagtgaaagagtcaattca 100  Q
    ||||| ||||||| | || ||||||||||||||||||||| |  ||||||||||  ||||||| |||||  ||| | ||| |||||  | |||||| | |    
T  6295054 tataacataaattcttatctttttgaatgacataaaaaatgtaacattcttatagacaaatttatttaagagtatagttgaaagtgcgaaagtcaactta 6295153  T
Q  101 aaaccatgtattctctt 117  Q
    ||| |||||||||||||    
T  6295154 aaaacatgtattctctt 6295170  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 44821041 - 44821094
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | || |||||||||||||  |||||||||| |||||||||    
T  44821041 tataatataaattcttatctttttgaatgacaccaaaaatatggtattcttata 44821094  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 11035781 - 11035860
Alignment:
Q  57 caaatttgtttaaccgtacacttggaagtgaaagagtcaattcaaaaccatgtattctctttatatattata-atatagat 136  Q
    |||||||||||||   || | ||| |||||||| |||||| |||||| ||||||||||||||||||| |||| ||||||||    
T  11035781 caaatttgtttaagattataattgaaagtgaaa-agtcaactcaaaatcatgtattctctttatatagtatacatatagat 11035860  T

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Target: scaffold1793 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1793
Description:

Target: scaffold1793; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 574 - 627
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||| | |||||||| |||||||  |||||||||| |||||||||    
T  574 tataatataaattcttatattttttaatgacaccaaaaatatggtattcttata 627  T

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Target: scaffold0244 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 16774 - 16721
Alignment:
Q  1 tataatataaattatcatatttttgaatgacataaaaaatatggcattcttata 54  Q
    ||||||||||||||| || ||||| ||||||| ||||||||||  |||||||||    
T  16774 tataatataaattattatctttttaaatgacacaaaaaatatgatattcttata 16721  T

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