View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_high_16 (Length: 369)
Name: NF3488_high_16
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 351
Target Start/End: Original strand, 2118425 - 2118752
Alignment:
| Q |
23 |
aaggaaatcaagggaccatgttaaacgggtcttattttannnnnnngataaaatgctaaatgaacgctttagttattgtttagatgcttaaacaatgtct |
122 |
Q |
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| T |
2118425 |
aaggaaatcaagggaccatgttaaacgggtcttttttt---ttgttgataaaatgctaaatgaacgctttagttattgtttagatgcttaaacaatgtct |
2118521 |
T |
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| Q |
123 |
taatggcatttgttaatatattttttataataatgagtactcttattcnnnnnnnggttg--aaagaacgagtactcttattcttcctatggttctaagt |
220 |
Q |
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| T |
2118522 |
taatgacacttgttaatatattttttataataatgagtactcttgttctttttttttttgtgaaagaacgagtactcttattcttcttatggttctaagt |
2118621 |
T |
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| Q |
221 |
tttatcatcataaaagagagaaaacacgcaagtgaatcgatccttagcttaacattaagtttgattttgactagatgtcaaaacgaatttgtatatctag |
320 |
Q |
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| T |
2118622 |
tttatcattataaaagagagaaagcacgcaaatgaatcgatccttagcttaacattaagtttgattttgactagatgtcaaaacgaatttgtgtatctaa |
2118721 |
T |
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| Q |
321 |
gtgactttaagtattttaattgcgtcaaagt |
351 |
Q |
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| T |
2118722 |
gtgactttaagtattttaattgcgtcaaagt |
2118752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 44455188 - 44455224
Alignment:
| Q |
101 |
tttagatgcttaaacaatgtcttaatggcatttgtta |
137 |
Q |
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| T |
44455188 |
tttagattcttaaacaatgtcttaagggcatttgtta |
44455224 |
T |
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