View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_high_17 (Length: 367)
Name: NF3488_high_17
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 69 - 352
Target Start/End: Original strand, 39032087 - 39032376
Alignment:
| Q |
69 |
ataagatctctgtaaacacaaatattgagctattttacgaactaaacacttacatattttgtaccttaattccacagtctgctttgaaaagaagaaacat |
168 |
Q |
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| T |
39032087 |
ataagatttctgtaaacacaaatattgagctattttacgaactaaacacttacatattttgtaccttaattccacagtccgctttgaaaaggagaaacat |
39032186 |
T |
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| Q |
169 |
cttattcactttatattgaacactttgccgtcataaaaagtcttgctctctttcacta----gaaaagtattgttctattggcgaagaaaactaacctag |
264 |
Q |
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| T |
39032187 |
cttattcactttatattgaacactttgccgtcataaaaagtcttgctgtctttcactaaaaagaaaagtattgttctatttgcgaagaaaactaacctag |
39032286 |
T |
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| Q |
265 |
ttatttttttcgtgtaaaataagctaaaatatataattagnnnnnnnnnnnnn--gaaggaataattagttcttatttcattatatatct |
352 |
Q |
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| T |
39032287 |
ttatttttttcgtgtaaaataagctaaaatatataattagtttttttttttttttgaaggaataattagttcttatttcattatatatct |
39032376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 39030222 - 39030266
Alignment:
| Q |
25 |
ggatttgcaaacaaaagaacaaatgtcgtctaaaattcacacaca |
69 |
Q |
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| T |
39030222 |
ggatttgcaaacgaaagaacaaatgtcgtctaaaattcacacaca |
39030266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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