View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_high_18 (Length: 352)
Name: NF3488_high_18
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 14504596 - 14504328
Alignment:
| Q |
1 |
ttttaagacattatcaattaagaaattgtcgtaataaatttagttgttcaagagtcgatgttgataaaaactgcagcctataattcaaattagagtgaat |
100 |
Q |
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| T |
14504596 |
ttttaagacattatcaattaagaaactgtcgtaataaatttagttgttcaagagtcaatgttgataaaaactgcagcctataattcaaattagagtgaat |
14504497 |
T |
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| Q |
101 |
tttcaatttgtttctcataattttctctcgattcattatagtctccgatnnnnnnnnnttgtccccaatataaaaataacatagactagttttagtttat |
200 |
Q |
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| T |
14504496 |
attcaattt-tttctcataattttttctcgattcattatagtctccgat--aaaaaaattgtccccaatataaaaataacatagactagtttgagtttat |
14504400 |
T |
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| Q |
201 |
cttttgtcgaaaattaaattgggttatggaaaaattgtgagggattaaattgaatcttcattctaaattaag |
272 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
14504399 |
cttttgtcggaaattaaattggattatggaaaaattgtgagggactaaattgaatcatcattctaaattaag |
14504328 |
T |
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