View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_high_20 (Length: 338)
Name: NF3488_high_20
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 51145354 - 51145066
Alignment:
| Q |
1 |
aatgtacctcaggtgacaaggacgtcaaaattcaaaatttatgtgtaaccagaaag-gtatgtaaattgaatcaatatgttggggaagatctttgatttc |
99 |
Q |
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| T |
51145354 |
aatgtacctcaagtgacaaggacgtcaaaattcaaaatttatgtgtaaccaaaaaaagtatgtaaattgaatcaatatgttggggaagatctttgatttc |
51145255 |
T |
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| Q |
100 |
tggtgaacannnnnnnacgtgattgaaggatattaagtaactatatataacaaagcatccaagcgaatatatgtagagctgatgttcaaactccgaacac |
199 |
Q |
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| T |
51145254 |
tggtgaacatttttttacgtgattgaagaatattaagtaactatatataacaaagcatccaagcgaatatatgtagagctgatgttcaaactccgaacac |
51145155 |
T |
|
| Q |
200 |
atcacttattcatttttaaaatgtgaatttttagtcattaaattaattgatnnnnnnnncatccaaacgaatattacattggcagagcat |
289 |
Q |
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| T |
51145154 |
gtcacttattcatttttaaaatgtgaatttttagtcattaaattatttgat-aaaaaaacatccaaatgaatattacattggcagagcat |
51145066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 19208924 - 19208873
Alignment:
| Q |
178 |
ctgatgttcaaactccgaacacatcacttattcatttttaaaatgtgaattt |
229 |
Q |
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| T |
19208924 |
ctgaggttcaaactccggacacctcacttattcactttaaaaatgtgaattt |
19208873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 40818456 - 40818514
Alignment:
| Q |
181 |
atgttcaaactccgaacacatcacttattcatttttaaaatgtgaatttttagtcatta |
239 |
Q |
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| T |
40818456 |
atgtttaaactctaaacacttcacttattcacctttaaaatgtgaatttttagccatta |
40818514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 12267237 - 12267188
Alignment:
| Q |
201 |
tcacttattcatttttaaaatgtgaatttttagtcattaaattaattgat |
250 |
Q |
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|||||||||||| |||||||||||||||| |||| | ||||||| ||||| |
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| T |
12267237 |
tcacttattcatctttaaaatgtgaatttctagttactaaattacttgat |
12267188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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