View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_high_28 (Length: 263)
Name: NF3488_high_28
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 14244349 - 14244162
Alignment:
| Q |
25 |
ataggaattttgaggcaggggtatgatttcggtttt-----gtcccgtagtatacttcggcctcattattttcaattgctttgggtgtttgggttgttgg |
119 |
Q |
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| T |
14244349 |
atagggattttgatgcagaggtatgctttcggttttctattgtccgttggtatacttcggcctcattatttagaatcgttttgggagcttgggttgttgg |
14244250 |
T |
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| Q |
120 |
tgttccgtatatttgcgacgccatttgtatccgtttctttgtttttat-gcaagtgttttgcgtcttgcagttctagtcgagaataaa |
206 |
Q |
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| T |
14244249 |
tgttccgtatatttgcggcgccatttgtatctgtttctttgttttttccgtgagtgttttgcgtcttgcaattctcgtcgagaataaa |
14244162 |
T |
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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 6354899 - 6354712
Alignment:
| Q |
25 |
ataggaattttgaggcaggggtatgatttcggtttt-----gtcccgtagtatacttcggcctcattattttcaattgctttgggtgtttgggttgttgg |
119 |
Q |
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| T |
6354899 |
atagggattttgatgcagaggtatgctttcggttttctattgtccgttggtatacttcggcctcattatttagaatcgttttgggagcttgggttgttgg |
6354800 |
T |
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| Q |
120 |
tgttccgtatatttgcgacgccatttgtatccgtttctttgtttttat-gcaagtgttttgcgtcttgcagttctagtcgagaataaa |
206 |
Q |
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| T |
6354799 |
tgttccgtatatttgcggcgccatttgtatctgtttctttgttttttccgtgagtgttttgcgtcttgcaattctcgtcgagaataaa |
6354712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 1874759 - 1874889
Alignment:
| Q |
25 |
ataggaattttgaggcaggggtatgatttcggtttt-----gtcccgtagtatacttcggcctcattattttcaattgctttgggtgtttgggttgttgg |
119 |
Q |
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| T |
1874759 |
atagggattttgaggtaggggtatgctttcggttttctattgtctgttggtatacttcggcctcattatttagaatcgttttgggagcttgggctgttgg |
1874858 |
T |
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| Q |
120 |
tgttccgtatatttgcgacgccatttgtatc |
150 |
Q |
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| T |
1874859 |
tgttccgtatatttgcggcgccatttgtatc |
1874889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 2315041 - 2314889
Alignment:
| Q |
69 |
gtatacttcggcctcattattttcaattgctttgggtgtttgggttgttggtgttccgtatatttgcgacgccatttgtatccgtttctttgtttttatg |
168 |
Q |
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| T |
2315041 |
gtatacttcggtctcattattttgttttgttttgggtgtttggattgttggtgtcccgtgtatttacagcgccatttgtatttatttcttcattttttcg |
2314942 |
T |
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| Q |
169 |
caagtgttttgcgtcttgcagttctagtcgagaataaatttgccatttcaaaaa |
222 |
Q |
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| T |
2314941 |
tgagtgttttgcgccttgcaatcctcgtcg-taataaatttgccatttcaaaaa |
2314889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 44464107 - 44464139
Alignment:
| Q |
195 |
gtcgagaataaatttgccatttcaaaaagaaaa |
227 |
Q |
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| T |
44464107 |
gtcgagaataaatttgccatttcaaaaaaaaaa |
44464139 |
T |
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