View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_low_1 (Length: 817)
Name: NF3488_low_1
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 736; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 10 - 801
Target Start/End: Original strand, 7289230 - 7290021
Alignment:
| Q |
10 |
catcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaatcgttggacttcaacaaatccttagaaatgaagaaaaatagaaaacttat |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7289230 |
catcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaatcgttagacttcaacaaatccttagaaatgaaaaaaaatagaaaacttat |
7289329 |
T |
|
| Q |
110 |
acaaattaaaccaacaccaacaccatcaataaaagcaaaatcatgaagtttctaaaaggaacactttctctatctgaacgtgaaggaggaataacatcat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7289330 |
acaaattaaaccaacaccaacaccatcaataaaagcaaaatcatgaagtttctaaaaagaacactttctctatctgaacgtgaaggaggaataacatcat |
7289429 |
T |
|
| Q |
210 |
caaagaacaatggttatgtcctaaaagggtattcagctgtttatattggagaagaacttaagaggttcatcataccaccaactgaatatttgggtcatca |
309 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7289430 |
caaagaacaatggttatgtcctaaaagggtatttagctgtttgtattggagaagaacttaagaggttcatcataccaccaactgaatatttgtgtcatca |
7289529 |
T |
|
| Q |
310 |
agcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattccttgtgaagtctctacttttgagtgtatt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7289530 |
agcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattctttgtgaagtctctacttttgagtgtatt |
7289629 |
T |
|
| Q |
410 |
ttgaagatggttgaagatcatggaaagaataaggatattgttcaaacaagaatgtagatcaattggcattgaagaaatgatgagttattgttctttagaa |
509 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7289630 |
ttgaagatggttgaagatcatggaaagaataaggatagtgttcaaacaagaatgtagatcaattggcattgaagaaatgatgagttattgttctttagaa |
7289729 |
T |
|
| Q |
510 |
aattaactcgcttgttctcatcatcctcaaagtccattgtgtagataaatataataattaaaaattattggatgttgcaaatttttatccatctttgcat |
609 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7289730 |
aattaactcgtttgttctcatcatcctcaaagtccattgtgtagataaatataataattaaaaattattggatgttgcaaatttttatccatctttgcat |
7289829 |
T |
|
| Q |
610 |
agctaaaccacttgtacttaactcatgaatgttttgttgttttgtatgttgcacctattttgataccttacaatagttcaaaattgtgctttcggcatcc |
709 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |
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| T |
7289830 |
agctaaaccacttgtacttaactcatgaatgttttgttgttttgtatgttgcacctattttgataccttaaaatagtttgaaattgtgcttccggcatcc |
7289929 |
T |
|
| Q |
710 |
actgtattatgggcaactttgcattttatttcatgacaattatggcaaaaagcataaatattttatactttattaatgaaatgttgattgct |
801 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7289930 |
actgtattatgggcaactttgcattttattacatgacaattatggcaaaaagcataaatattttatactttattaatgaaatgttgattgct |
7290021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 604
Target Start/End: Complemental strand, 1197351 - 1196757
Alignment:
| Q |
11 |
atcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaatcgttggacttcaacaaatcctta-gaaatgaagaaaaatagaaaacttat |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |||||| |||||||||| ||||| || |
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| T |
1197351 |
atcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaactcat |
1197252 |
T |
|
| Q |
110 |
-acaaattaaa-ccaacaccaacaccatcaataaaagcaaaatcatgaagtttctaaaaggaacactttctctatctgaacgtgaaggaggaataacatc |
207 |
Q |
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| T |
1197251 |
caaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaacatc |
1197152 |
T |
|
| Q |
208 |
atcaaagaacaatggttatgtcctaaaagggtattcagctgtttatattggagaagaacttaagaggttcatcataccaccaactgaatatttgggtcat |
307 |
Q |
| |
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|||||| |||||||||| ||| | |||||| |||| |||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
1197151 |
atcaaacaacaatggttctgttccaaaaggatatttagctgtttgtgttggagaagagcttaagaggttcatcatacca---actgaatatttgggtcat |
1197055 |
T |
|
| Q |
308 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattccttgtgaagtctctacttttgagtgta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
1197054 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
1196955 |
T |
|
| Q |
408 |
ttttgaagatggttgaagatcatggaaagaataagga-tattgttcaaa-caagaatgtagatcaattggcattgaagaaatgatgagttattgttcttt |
505 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||| |
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| T |
1196954 |
ttttgaagatggttgaagatcatggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttcttt |
1196855 |
T |
|
| Q |
506 |
agaaaattaactcgcttgttctcatcatcctcaaagtccattgtgtagataaatataataattaaaaattattggatgttgcaaatttttatccatctt |
604 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
1196854 |
agaaaatcaacttgcttgttctcatcatcctcaaagtccattgtgtagataaatataataatt-aatattattggatgttgcaaatttttatccatctt |
1196757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 286 - 425
Target Start/End: Original strand, 50471179 - 50471318
Alignment:
| Q |
286 |
accaactgaatatttgggtcatcaagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattccttgt |
385 |
Q |
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|||||| || ||||||| ||||||||| ||||| || | | ||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||| |
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| T |
50471179 |
accaaccgagtatttggctcatcaagcctttcatatattactcagagaagctgaagaagaatttgggtttgaacaaactggtgttctgagaattccttgt |
50471278 |
T |
|
| Q |
386 |
gaagtctctacttttgagtgtattttgaagatggttgaag |
425 |
Q |
| |
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||||| || |||||| |||| |||||||||||||||| |
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| T |
50471279 |
gaagtttcagtgtttgagagtatcttgaagatggttgaag |
50471318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 50470930 - 50470979
Alignment:
| Q |
34 |
aaagaaatctaacaaaattagagaaatcgttggacttcaacaaatcctta |
83 |
Q |
| |
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||||||| |||||||||| |||||||||||| |||||||||| ||||||| |
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| T |
50470930 |
aaagaaacctaacaaaatcagagaaatcgttagacttcaacagatcctta |
50470979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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