View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_low_11 (Length: 445)
Name: NF3488_low_11
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 11294340 - 11293943
Alignment:
| Q |
19 |
gtaaggaaaagggttcatcacacctccaccaaggnnnnnnnaaaaacaaaaccttttgggtcccccgcatgggatttcaagaaatattgaaaggtacctc |
118 |
Q |
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| T |
11294340 |
gtaaggaaaagggttcatcacacctccaccaaggtttttttaaaaacaaaaccttttgggtcccccgcatgggatttcaagaaatattgaaaggtacctc |
11294241 |
T |
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| Q |
119 |
cacctttgtatgnnnnnnnnaatcnnnnnnnn--tcaagcaatgttatatgaaaaacaaaacaaagtggacctgacccaaaggtagggttacatgttcca |
216 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11294240 |
cacctttgtatgttttttttaataaaaaaaaaaatcaagcaatgttatatgaaaaacaaaacaaagtggacctgacccaaaggtagggttacatgttcca |
11294141 |
T |
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| Q |
217 |
aactcttcctcttccagaaggaaagttatatgcataaagaggacttcattatcatagcacatagcaaagggagacnnnnnnnncacaagtgagtttgtgt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11294140 |
aactcttcctcttccagaaggaaagttatatgcataaagaggacttcattatcatagcacatagcaaagggagacaaaaaaaacacaagtgagtttgtgt |
11294041 |
T |
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| Q |
317 |
atagccagccaacca-ttgactcctctcgagtctccatcatagattaatccatttttctaaagagtctaaagacaaaacgcacacattctaataagca |
413 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| |
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| T |
11294040 |
atagccagccaaccatttgactcctctcgagtctccatcatagattaatccatttttttaaagagtctaaagacaaaacgcgcacatactaataagca |
11293943 |
T |
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