View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_low_13 (Length: 440)
Name: NF3488_low_13
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 6434434 - 6434640
Alignment:
| Q |
14 |
acatcatcattgtactggtacttcaaatcacgacaatttgcaatacnnnnnnnn-ctcacgcatgaaccaccactgtcctaaagtacagataatgaaaca |
112 |
Q |
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| T |
6434434 |
acatcatcattgtactggtacttcaaatcacgacaatttgcaatacaaaacaaaactcacggatgaaccaccactgtcctaaagtacagaaaatgaaaca |
6434533 |
T |
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| Q |
113 |
aactactttgacttaaactggttaataaattatggttatgaagaattgtttaaaaaactaacacaatagtaatttaccgattgagattgagcaaagtagg |
212 |
Q |
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| T |
6434534 |
aactactttgacttaaactggttaataaattatggttatgaagaattgtttaaaaaactaacacaatagtaatttaccaattgagattgagcaaagtagg |
6434633 |
T |
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| Q |
213 |
aatgaat |
219 |
Q |
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||||||| |
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| T |
6434634 |
aatgaat |
6434640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 6434748 - 6434844
Alignment:
| Q |
226 |
tttgggtaaaagaaagaagtaaatggaaatgaaaaaagggacagtcccccaacataaatatggagttttatttttcataatagcacaaagtcttttt |
322 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6434748 |
tttgggtaaaacaaagaagtaaatggaaatgaaagaagggacagtcccccaacttaaatatggagttttatttttcaaaatagcacaaagtcttttt |
6434844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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