View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_low_16 (Length: 373)
Name: NF3488_low_16
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 5899734 - 5899981
Alignment:
| Q |
13 |
gagagtgaggacagaacaaatattaaaatcaacgatttcatgaaagattaacgcatatacatatcagatgcacaagctaggagacaagtacaactatacc |
112 |
Q |
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| T |
5899734 |
gagagtgaggacagaacaaatattaaaatcaacaatttcatgaaagattaacgcatatacatatcagatgcacaagctaggagacaagtacaactatacc |
5899833 |
T |
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| Q |
113 |
tgagacaagaattttcttgctggtagtagatgatctaccacgaggtctttttgcaattgaaggtacatgctccactgctctagtattttttctctttctg |
212 |
Q |
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| T |
5899834 |
tgagacaggaattttcttgctggtagtggatgatctaccacgaggtctttttgcaattgaaggtacatgctccactgctttagtattttttctctttctg |
5899933 |
T |
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| Q |
213 |
tcagatacactcaaaacaggtgtttcgaagcttccattctctgaattg |
260 |
Q |
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| T |
5899934 |
tcagatacactcaaaacaggtgtttcgaagcttccattctctgaattg |
5899981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 5860758 - 5861004
Alignment:
| Q |
13 |
gagagtgaggacagaacaaatattaaaatcaacgatttcatgaaagattaacgcatatacatatcagatgcacaagctaggagacaagtacaactatacc |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| |
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| T |
5860758 |
gagattgaggacagaacaaatattaaaatcaacgatttcatgaaagattaacgcatatacatatcggatacacaagctaggagacaaatacaactatacc |
5860857 |
T |
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| Q |
113 |
tgagacaagaattttcttgctggtagtagatgatctaccacgaggtctttttgcaattgaaggtacatgctccactgctctagtat-tttttctctttct |
211 |
Q |
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| T |
5860858 |
tgagacaggaattttcctgctggtagtggatgatctaccacgaggtcttttttcaattgaaggtgcatgctccactgctctagtatgtttttctttttct |
5860957 |
T |
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| Q |
212 |
gtcagatacactcaaaacaggtgtttcgaagcttccattctctgaat |
258 |
Q |
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| T |
5860958 |
gtcagatacactcaaaacaggtgtttcgaaacttctattctctgaat |
5861004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 253 - 352
Target Start/End: Original strand, 5861246 - 5861343
Alignment:
| Q |
253 |
ctgaattgataaccattcttggattgcaaagtttcgcacttcaaacacaacagaagaaaagtgtgactaagtgaagctatgtacaagtccccattgttct |
352 |
Q |
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| T |
5861246 |
ctgaatcgataatcattcttggctcgcaaagttgcacacttcaaacacaacagaagaaaattgtgac--agtgaagatatgtagaagtccccattgttct |
5861343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 5900139 - 5900189
Alignment:
| Q |
305 |
gaagaaaagtgtgactaagtgaagctatgtacaagtccccattgttctact |
355 |
Q |
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| T |
5900139 |
gaagaaaattgtgactaagtgaagatatgtagaagtccccattgtactact |
5900189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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