View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_low_20 (Length: 344)
Name: NF3488_low_20
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 27215358 - 27215690
Alignment:
| Q |
1 |
ttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatatacaaatacgaatgaatttattaagcgcatgaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
27215358 |
ttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaaccactgcatatacaaatacaaatgaatttagtaagcgcatgaa |
27215457 |
T |
|
| Q |
101 |
gagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgcaaaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27215458 |
gagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgcaaaacta |
27215557 |
T |
|
| Q |
201 |
aggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatatatattaattagtgagagtttttcg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27215558 |
aggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatatatattaattagtgagagtttttcg |
27215657 |
T |
|
| Q |
301 |
attgtagtttgttgtgtgaaggtgatttgatga |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
27215658 |
attgtagtttgttgtgtgaaggtgatttgatga |
27215690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 27221320 - 27221595
Alignment:
| Q |
1 |
ttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatatacaaatacgaatgaatttattaagcgcatgaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
27221320 |
ttcctggccatacagtgtattcacacctatttgtgaaagtcaccttagctcctccaaccactgcatatacaaatacaaatgaatttaataagcgcatgaa |
27221419 |
T |
|
| Q |
101 |
gagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgcaaaacta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27221420 |
gagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccatagaagaggaatgcaaaacta |
27221519 |
T |
|
| Q |
201 |
aggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatat |
276 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27221520 |
aggcatagagcaacgcgggtgcttgtcattttggatatggcttttgatgaatcttgttttgcaggcttgtgaatat |
27221595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 78 - 276
Target Start/End: Complemental strand, 27443443 - 27443248
Alignment:
| Q |
78 |
aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaattgattaattatatggaa---aattaatgtagttatgtattgatatatgtacg |
174 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| ||||||||||||| ||| |||||||| |
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| T |
27443443 |
aatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatat----a |
27443348 |
T |
|
| Q |
175 |
taccgtagaagaggaatgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaat |
274 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
27443347 |
taccatagaagaggaatgcaaaactaaggcatagagcaacacgagtgcttgtcattttggatatggc--ttgatgaatcttgttttgcaggcttgtgaat |
27443250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27207987 - 27208053
Alignment:
| Q |
1 |
ttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata |
67 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27207987 |
ttcctggccatacagtgtatgcacacctatttgtgaatgtcaccttagctcctccaaccactgcata |
27208053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27443543 - 27443468
Alignment:
| Q |
1 |
ttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatatacaaatac |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||| |
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|
| T |
27443543 |
ttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaacaactgcataaagaaatac |
27443468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27433067 - 27433133
Alignment:
| Q |
1 |
ttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata |
67 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
27433067 |
ttcccggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccgctgcata |
27433133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 238
Target Start/End: Original strand, 27208086 - 27208246
Alignment:
| Q |
78 |
aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaatt----gattaattatatggaaaattaatgtagttatgtattgatatatgtac |
173 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||| |||||| |||||| |||||| |||||||||||||||||||||| ||| |||||||| |
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|
| T |
27208086 |
aatgaatttattaaccacatgaagagaaataaactaagctaaatgaattaatggattaactatatggaaaattaatgtagttgagtactgatatat---- |
27208181 |
T |
|
| Q |
174 |
gtaccgtagaagaggaatgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatat |
238 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||| | |||||||||| ||| ||||||||||||| |
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|
| T |
27208182 |
ataccatagaagaggaatgcaaagctaaagcataaagcaacacggttgcacttcattttggatat |
27208246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 276
Target Start/End: Original strand, 27433166 - 27433367
Alignment:
| Q |
78 |
aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaattgattaatta----tatggaaaattaatgtagtt--atg--tattgatatat |
169 |
Q |
| |
|
|||||||||||||| | ||||||||| ||| || | |||||| |||||| ||| |||| |||||||||||||||||||| ||| || |||||||| |
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|
| T |
27433166 |
aatgaatttattaaccacatgaagaggaataaaataagctaaatgaattaatttattaactatatggaaaattaatgtagttgaatgagtactgatatat |
27433265 |
T |
|
| Q |
170 |
gtacgtaccgtagaagaggaatgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttg |
269 |
Q |
| |
|
| |||| |||||||||||||| || |||| ||| | ||||||| ||||| | |||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
27433266 |
at---taccatagaagaggaatgccaagctaaagcataaagcaacatgggtgttcttcattttggatatgactt--gattaatcttgttttgcaggcttg |
27433360 |
T |
|
| Q |
270 |
tgaatat |
276 |
Q |
| |
|
||||||| |
|
|
| T |
27433361 |
tgaatat |
27433367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27410237 - 27410303
Alignment:
| Q |
1 |
ttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata |
67 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
27410237 |
ttcctggccatacagtatatccacatctattcgtgaatgtcaccttggctcctccaaccactgcata |
27410303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27415820 - 27415756
Alignment:
| Q |
1 |
ttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgca |
65 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
27415820 |
ttcctggccatacagtgtatacacatctattcgtgaatgtcaccttggctcctccaacctctgca |
27415756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 27455314 - 27455409
Alignment:
| Q |
78 |
aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaattgattaatt----atatggaaaattaatgtagttatgtattgatatat |
169 |
Q |
| |
|
|||||||||||||| | ||||||||| ||| |||| |||||| |||||| ||| ||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
27455314 |
aatgaatttattaaccacatgaagagcaataaactaagctaaatgaattaattgatttactatatggaaaattaatgtagttgggtattgatatat |
27455409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 27455223 - 27455277
Alignment:
| Q |
9 |
catacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactg |
63 |
Q |
| |
|
|||||| | ||||||||| |||| |||||||||||||||||||||||||| |||| |
|
|
| T |
27455223 |
catacaatttattcacacttattggtgaatgtcaccttagctcctccaactactg |
27455277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 27390262 - 27390304
Alignment:
| Q |
175 |
taccgtagaagaggaatgcaaaactaaggcacagagcaacacg |
217 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
27390262 |
taccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27390304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 27410497 - 27410539
Alignment:
| Q |
175 |
taccgtagaagaggaatgcaaaactaaggcacagagcaacacg |
217 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
27410497 |
taccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27410539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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