View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_low_25 (Length: 315)
Name: NF3488_low_25
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 35 - 315
Target Start/End: Original strand, 6434176 - 6434456
Alignment:
| Q |
35 |
tcaagaaaaataacttatatgtatctgtaaaaacattatattttgttttaggaagggaaaaaacataatatttgtattggctggctcctaagttgtgtnn |
134 |
Q |
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| T |
6434176 |
tcaagaaaaataacttatatgtatctgtaaaaacattatattttgttttaggaagggaaaaaacataatatttgtattggctggctcctaagttgtgtaa |
6434275 |
T |
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| Q |
135 |
nnnnntaatcgatattttttgcttcacaggacaatttttctgaaatcatgactatacttggtaacaaaatttcataaattttcatccaaatggaagcatt |
234 |
Q |
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| T |
6434276 |
aaaaataatcgataatttttgcttcacaggacaaattttctgaaatcatgactatacttggtaacaaaatttcataaattttcatccaaatggaagcatt |
6434375 |
T |
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| Q |
235 |
tgtcagcctctctttaaagagctacgtatgtgtatgtccacaaccatgtctttcttgaacatcatcattgtactggtactt |
315 |
Q |
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| T |
6434376 |
tgtcagcctctctttaaagagttacgtatgtgtatgtccacaaccatgtctttcttgaacatcatcattgtactggtactt |
6434456 |
T |
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