View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3488_low_26 (Length: 305)
Name: NF3488_low_26
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 27214873 - 27214605
Alignment:
| Q |
17 |
atgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgca |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27214873 |
atgtccacccacagactattctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgca |
27214774 |
T |
|
| Q |
117 |
agacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaattattgaacttatgtctttatataaaata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27214773 |
agacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaatcattgaacttatgtctttatataaaata |
27214674 |
T |
|
| Q |
217 |
agagcacatatataaatgtgcacatatacacacaaacttgtggtatagtataaatcaaaacatagcgtg |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27214673 |
agagcacatatataaatgtgcacatatacacacaaacttgtggtatagtataaatcaaaacatagcgtg |
27214605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 27220835 - 27220582
Alignment:
| Q |
17 |
atgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgca |
116 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27220835 |
atgtccacccacaaactactctatgattttcaagaaccaatgccccggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgca |
27220736 |
T |
|
| Q |
117 |
agacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaattattgaacttatgtctttatataaaata |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27220735 |
agacccgactacgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaattattgaacttatgtctttatataaaata |
27220636 |
T |
|
| Q |
217 |
agagcacatatataaatgtgcacatatacacacaaacttgtggtatagtataaa |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27220635 |
agagcacatatataaatgtgcacatatacacacaaacttgtggtatagtataaa |
27220582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 27444028 - 27444184
Alignment:
| Q |
17 |
atgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgca |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27444028 |
atgtccacccacagactattctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgca |
27444127 |
T |
|
| Q |
117 |
agacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaa |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27444128 |
agacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaa |
27444184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 27207502 - 27207253
Alignment:
| Q |
17 |
atgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgca |
116 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| || ||||||| |||||||| || ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27207502 |
atgtccacccacagactactctaagattttcaaggacgagtgccccggtgcttacagttatgcttacgacgataagagcagcattttcacttgctttgca |
27207403 |
T |
|
| Q |
117 |
agacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaattattgaacttatgtctttatataaaata |
216 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| | ||||||| |
|
|
| T |
27207402 |
agacccgactatgcaatcaccttctgcccatcagcttgaactcctcgaccaaacaaatataccattttaaattatttaacttatgtctttgtctaaaata |
27207303 |
T |
|
| Q |
217 |
agagcacatatataaatgtgcacatatacacacaaacttgtggtatagtat |
267 |
Q |
| |
|
|| |||||| | |||||||||||||| ||||| | |||||||||||| |
|
|
| T |
27207302 |
agtgcacatgt-gcaatgtgcacatatatacacacaaacgtggtatagtat |
27207253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 27432582 - 27432450
Alignment:
| Q |
17 |
atgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432582 |
atgtccacccacagactactctatggttttcaagaaccaatgcccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgca |
27432483 |
T |
|
| Q |
117 |
agacccgactatgccatcaccttctgtccatca |
149 |
Q |
| |
|
|||||||| || |||||||||||||| |||||| |
|
|
| T |
27432482 |
agacccgattacgccatcaccttctgcccatca |
27432450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 27409752 - 27409620
Alignment:
| Q |
17 |
atgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgca |
116 |
Q |
| |
|
||||||||| ||| | ||||||||||||||||||||||| || || | ||| ||||||||||||||||| ||| |||||||||||||||||||| || |
|
|
| T |
27409752 |
atgtccacctacaaattactctatggttttcaagaaccaatgtcctgatgcctatagctatgcttacgataatacgagcagcactttcacttgctctggt |
27409653 |
T |
|
| Q |
117 |
agacccgactatgccatcaccttctgtccatca |
149 |
Q |
| |
|
| || |||||||| |||| ||| ||||||||| |
|
|
| T |
27409652 |
ggtcctgactatgcaatcatcttttgtccatca |
27409620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 27416316 - 27416443
Alignment:
| Q |
23 |
acccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgcaagaccc |
122 |
Q |
| |
|
||||||||| ||||| ||| |||| ||||||| || || | ||||||||||||||||||||| ||||| ||||||||||||||||||| ||| | || |
|
|
| T |
27416316 |
acccacagattactccatgttttttgagaaccaatgtcctgatgcttatagctatgcttacgatgataatagcagcactttcacttgctctgctggtcct |
27416415 |
T |
|
| Q |
123 |
gactatgccatcaccttctgtccatcag |
150 |
Q |
| |
|
|||||| | |||| ||| |||||||||| |
|
|
| T |
27416416 |
gactatacaatcatcttttgtccatcag |
27416443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 27388747 - 27388702
Alignment:
| Q |
66 |
gcttatagctatgcttacgacgataagagcagcactttcacttgct |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27388747 |
gcttatagctatgcttacgatgataagagcagcactttcacttgct |
27388702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University