View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_low_27 (Length: 279)
Name: NF3488_low_27
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 99 - 269
Target Start/End: Complemental strand, 34015399 - 34015230
Alignment:
| Q |
99 |
tggtagagattattataatgtaacaatacactagagatttggatcgaagtgttgaatgataactctcatcataatctttgcgaacaaaatacttgggtat |
198 |
Q |
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| T |
34015399 |
tggtagagattattataatgtaacaatacactagagatttggatcgaagtcttgaatgataactctcatcataatctttgtgaacaaaatacttgggtat |
34015300 |
T |
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| Q |
199 |
atctctcaaaaagaatnnnnnnnntacttgtgtagtcttgcggaaacgaaagctaattggttgaacctttg |
269 |
Q |
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| T |
34015299 |
atctctcaaaaagaat-aaaaaaatacttgtgtagtcttgcggaaacgaaagctaattggttgaacctttg |
34015230 |
T |
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Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 34016123 - 34016044
Alignment:
| Q |
1 |
ctttattatataatactgtattttgtttgactttttccctgcttatatcaactcagaagaagaacaagaaaatatgaatg |
80 |
Q |
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| T |
34016123 |
ctttattatataatactgtattttgtttgacttttttcctgcttatatcaactcagaagaagaacaagagaatatgaatg |
34016044 |
T |
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