View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_low_3 (Length: 602)
Name: NF3488_low_3
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 134 - 498
Target Start/End: Original strand, 36953036 - 36953396
Alignment:
| Q |
134 |
aaattatcaaaatactactaaatagttaaacctgtatgtttgaatcctttaaaa--atagtgcaagtgaatcgtttgaagctagtgtagacatatattgt |
231 |
Q |
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| T |
36953036 |
aaattctcaaagtactactaaatagttaaacctgaatgtttgaatcctttaaaacaatagtgcaagtgaatcatttgaaactagtgtacacataaattat |
36953135 |
T |
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| Q |
232 |
tgcagttctaagttgttggaaagtgggcaaagaatagtagagaaaagatcataaaatcattgctatgggtaaggattttgggttaaatgatttatctaag |
331 |
Q |
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| T |
36953136 |
tgcagttttaagttgttggaaagtgggaaaagaataatagag-aaagatcataaaatcattg--ttgggtaaggattttggg-tgaatgatttagctaag |
36953231 |
T |
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| Q |
332 |
tgaatcaaccagatctatctatgcatacataaacttctgtttcttcatggcagttggtaacttaatacaatgaaatgagtccaatatttca-tttgaatg |
430 |
Q |
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| T |
36953232 |
tgaatcaactagatttatctatgcatgcataaacttttttttcttcttggaagctggtaagttaatacaatgaaataagtccaatgttccattttgaatg |
36953331 |
T |
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| Q |
431 |
gtaatttgcaagggttttccttttattaatacaaac---taaacatcatatgcaagattctagagatgtag |
498 |
Q |
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| T |
36953332 |
ataatttgcaagagttttgc------taatacaaactattaaagatcatgtgcaagattctagagatgtag |
36953396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 36947346 - 36947481
Alignment:
| Q |
23 |
ttgtaaatatttcaatcttacatgataacacacacgcccacaaacccaccacattcatataatttatcatatttgctttcattaggctccaactagaaag |
122 |
Q |
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| T |
36947346 |
ttgtaaatatttcaatcttagatgtttatacacacacccacaaacccaccacattcatataattcatcaaatttgctttcattaggctccaactagaaag |
36947445 |
T |
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| Q |
123 |
aggcgaggagaaaattatcaaaatactactaaatag |
158 |
Q |
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| T |
36947446 |
aggcgaggagaaaattatcaaaatactactaaatag |
36947481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 386 - 549
Target Start/End: Original strand, 36949356 - 36949514
Alignment:
| Q |
386 |
tggtaacttaatacaatgaaatgagtcc-aatatttcatttgaatggtaatttgcaagggttttccttttattaatacaaactaaacatcatatgcaaga |
484 |
Q |
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| T |
36949356 |
tggtaacttaatccaatgaaataagtcccaatattt-atttgaatggtaatttgcaagggttttact------aatacaaactaaacatcatacgcaaga |
36949448 |
T |
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| Q |
485 |
ttctagagatgtagag-aaaaaattacgaaaatttaaccttaatatatcatattatcaatatttta |
549 |
Q |
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| T |
36949449 |
ttctagagatgcagggaaaaaaattacgaaaatttaacctcaatatattgtattatcaatttttta |
36949514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 36947890 - 36947938
Alignment:
| Q |
154 |
aatagttaaacctgtatgtttgaatcctttaaaaatagtgcaagtgaat |
202 |
Q |
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| T |
36947890 |
aatagttaaacctgtatgtttgaatcctttaaaaatagtgcaagtgaat |
36947938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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