View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3488_low_4 (Length: 569)

Name: NF3488_low_4
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3488_low_4
NF3488_low_4
[»] scaffold0082 (2 HSPs)
scaffold0082 (425-512)||(30701-30788)
scaffold0082 (147-216)||(14182-14251)
[»] scaffold0212 (2 HSPs)
scaffold0212 (221-295)||(27388-27462)
scaffold0212 (323-356)||(15709-15742)
[»] scaffold0015 (1 HSPs)
scaffold0015 (221-295)||(214810-214884)
[»] chr8 (1 HSPs)
chr8 (221-295)||(21957964-21958038)
[»] chr4 (1 HSPs)
chr4 (223-295)||(24749154-24749226)
[»] scaffold0108 (1 HSPs)
scaffold0108 (357-423)||(971-1037)
[»] chr2 (2 HSPs)
chr2 (222-291)||(32858357-32858426)
chr2 (323-356)||(36499550-36499583)
[»] chr3 (1 HSPs)
chr3 (1-42)||(40889557-40889598)
[»] scaffold0221 (1 HSPs)
scaffold0221 (102-144)||(25160-25202)
[»] chr5 (1 HSPs)
chr5 (251-281)||(42451549-42451579)
[»] chr7 (1 HSPs)
chr7 (43-79)||(11593117-11593153)


Alignment Details
Target: scaffold0082 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 425 - 512
Target Start/End: Complemental strand, 30788 - 30701
Alignment:
Q  425 agcaccttttttcactttatcactggattgcgaacttacttatccttttgatgagaatgccactactcttacttactatcttcaaagc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30788 agcaccttttttcactttatcactggattgcgaacttacttatccttttgatgagaatgccactactcttacttactatcttcaaagc 30701  T

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Target: scaffold0082; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 14182 - 14251
Alignment:
Q  147 gctttttgtgctcgcatgtcctatgttttctacaaagatccacatatttgttgttccgttcaacactgtt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14182 gctttttgtgctcgcatgtcctatgttttctacaaagatccacatatttgttgttccgttcaacgctgtt 14251  T

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Target: scaffold0212 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0212
Description:

Target: scaffold0212; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 27388 - 27462
Alignment:
Q  221 ggttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27388 ggttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 27462  T

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Target: scaffold0212; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 15742 - 15709
Alignment:
Q  323 ttcttgtagcagccaccgcttcggatcctgcacc 356  Q
    ||||||||||||||||||||||||||||||||||    
T  15742 ttcttgtagcagccaccgcttcggatcctgcacc 15709  T

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Target: scaffold0015 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 214810 - 214884
Alignment:
Q  221 ggttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  214810 ggttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 214884  T

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Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 21958038 - 21957964
Alignment:
Q  221 ggttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21958038 ggttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 21957964  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 24749226 - 24749154
Alignment:
Q  223 ttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 295  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24749226 ttgtaaagctcattcccgatcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatctttctgg 24749154  T

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Target: scaffold0108 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 357 - 423
Target Start/End: Original strand, 971 - 1037
Alignment:
Q  357 gaaaagatctgttgacgtcagctatgtgatcactcaacgatcagtgctacagctcagcctgacctga 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  971 gaaaagatctgttgacgtcagctatgtgatcactcaacgatcagtgctacagctcagcctgacctga 1037  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 32858426 - 32858357
Alignment:
Q  222 gttgtaaagctcattcccggtcttgcaacttggtttacagccgacaaagaaaaaagagtccaatatcttt 291  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| || |||||||||    
T  32858426 gttgcaaagctcattctcggtcttgcaacttggtttacatccgacaaagaaaaaagattctaatatcttt 32858357  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 36499550 - 36499583
Alignment:
Q  323 ttcttgtagcagccaccgcttcggatcctgcacc 356  Q
    ||||||||||||||||||||||||||||||||||    
T  36499550 ttcttgtagcagccaccgcttcggatcctgcacc 36499583  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40889557 - 40889598
Alignment:
Q  1 caggtgttgcgttagtagaataggtaagactagtttaccact 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40889557 caggtgttgcgttagtagaataggtaagactagtttaccact 40889598  T

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Target: scaffold0221 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 25160 - 25202
Alignment:
Q  102 gaacaagtagagtatactagggcgcttgagagaaccacgtcga 144  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  25160 gaacaagtagagtatactagggcgcttgagagaaccatgtcga 25202  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 281
Target Start/End: Complemental strand, 42451579 - 42451549
Alignment:
Q  251 ttggtttacagccgacaaagaaaaaagagtc 281  Q
    |||||||||||||||||||||||||||||||    
T  42451579 ttggtttacagccgacaaagaaaaaagagtc 42451549  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 11593117 - 11593153
Alignment:
Q  43 cttcgaattgggagggcgatcctcccggtgaactgac 79  Q
    ||||||||||||||||||||||||||  |||||||||    
T  11593117 cttcgaattgggagggcgatcctcccaatgaactgac 11593153  T

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