View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_low_5 (Length: 564)
Name: NF3488_low_5
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 196 - 536
Target Start/End: Complemental strand, 38115530 - 38115194
Alignment:
| Q |
196 |
catgaattaataagatattgagatggattggaattattatgaatgcaagagtgaggaagatgaaaaacggttgagatgattttaccggttagattttctg |
295 |
Q |
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| T |
38115530 |
catgaattaataagatattgagatggattggaattattatgaatgcaagagtgaggaagatgaaaaacggttgagatgattttaccggttagattttctg |
38115431 |
T |
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| Q |
296 |
atatttccaagttgtgagagaagtgaaggattgtagcacagtgaaacagcgatctcaaaatattccaactctgaatgagttttgaatatattgatttatt |
395 |
Q |
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| T |
38115430 |
atatttccaagttgtgagagaagtgaaggattgtagcacagtgaaacagcgatctcaaaatattccaactctgaatgagttttgaatatattgctttatt |
38115331 |
T |
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| Q |
396 |
ttcccaatcacaatttgaaatgcgcgcgttttcttgtgacagtgaaactgcatattgggaaataaatattcaagttttattggacgttagtgtaacacta |
495 |
Q |
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| T |
38115330 |
ttcccaatcacaatttgaaatgcgcgcgttttcttgtgacagtgaaactgcatattggga----aatattcaagttttattggacgttagtgtaacacta |
38115235 |
T |
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| Q |
496 |
attttcattgatcgtacatcttccatcttctcttcaaaata |
536 |
Q |
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| T |
38115234 |
attttcattgatcgtacattttccatcttctcttcaaaata |
38115194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 38115738 - 38115551
Alignment:
| Q |
13 |
aaaatctgaagattcgaaaaaagaaaagataagataaaattattgatgatacaactgcaacgcaacaaattgaacagaatcagaacttaattccaatgca |
112 |
Q |
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| T |
38115738 |
aaaatctgaagattcgaaaaaagaaaagataagataaaattattgatgatacaactgcaac-----aaattgaacagaatcagaacttaattccaatgca |
38115644 |
T |
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| Q |
113 |
aaaaccaaatagaaatgaaacagaatggttatatcatatagatgatgaattgattgagaaataagcttcgttaatcatcaaaacatgaattaa |
205 |
Q |
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| T |
38115643 |
aaaaccaaatagaaatgaaacagaatgcttatatcatatagatgatgaattgattgagaaataagcttcgttaatcatcaaaacattaattaa |
38115551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 38159523 - 38159464
Alignment:
| Q |
238 |
atgcaagagtgaggaagatgaaaaacggttgagatgattttaccggttagattttctgat |
297 |
Q |
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| T |
38159523 |
atgcaagagcgaagaagacgaaaaacggttgagatgaatttaccagttaggttttttgat |
38159464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 197 - 371
Target Start/End: Complemental strand, 49003409 - 49003231
Alignment:
| Q |
197 |
atgaattaataagatattgagatggattggaattattatgaatgcaagagtgaggaagatgaaaaacggttgagatgattttaccggttagattttctga |
296 |
Q |
| |
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|||||||||| ||||||||||||||||| | |||||||||||||||| || |||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
49003409 |
atgaattaatcagatattgagatggattcaa---attatgaatgcaagagcgaagaagatgaaaaacggttgagatgaatttaccggttaggttttctga |
49003313 |
T |
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| Q |
297 |
t-------atttccaagttgtgagagaagtgaaggattgtagcacagtgaaacagcgatctcaaaatattccaactctgaat |
371 |
Q |
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| | |||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||| |||||| ||||||| |
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| T |
49003312 |
ttgttggagtctccaagttgtgagagaagaaaaggattgtagcagagtgaaagagcgatctctaaattttccaaatctgaat |
49003231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 49003564 - 49003501
Alignment:
| Q |
13 |
aaaatctgaagatt-cgaaaaaagaaaagataagataaaattat---tgatgatacaactgcaac |
73 |
Q |
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| T |
49003564 |
aaaatctgaagatttcgaaaatagaaa-gataagataaaattatctatgatgatacaactgcaac |
49003501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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