View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3488_low_6 (Length: 545)

Name: NF3488_low_6
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3488_low_6
NF3488_low_6
[»] chr4 (4 HSPs)
chr4 (164-535)||(4605278-4605646)
chr4 (25-75)||(4605732-4605780)
chr4 (37-75)||(26067332-26067370)
chr4 (40-72)||(28477008-28477040)
[»] chr5 (3 HSPs)
chr5 (37-75)||(34303665-34303703)
chr5 (40-75)||(33857882-33857917)
chr5 (40-72)||(32736634-32736666)
[»] chr7 (4 HSPs)
chr7 (35-72)||(39599193-39599230)
chr7 (41-72)||(7606335-7606366)
chr7 (40-72)||(7814323-7814355)
chr7 (36-72)||(27425604-27425640)
[»] chr2 (6 HSPs)
chr2 (412-535)||(18792685-18792805)
chr2 (37-75)||(20170508-20170546)
chr2 (37-71)||(38502331-38502365)
chr2 (37-73)||(29750296-29750332)
chr2 (37-73)||(29754586-29754622)
chr2 (37-73)||(40859900-40859936)
[»] chr8 (4 HSPs)
chr8 (39-71)||(6235422-6235454)
chr8 (37-75)||(1351786-1351824)
chr8 (40-72)||(34142878-34142910)
chr8 (37-69)||(41368730-41368762)
[»] chr1 (2 HSPs)
chr1 (37-72)||(31239146-31239181)
chr1 (37-75)||(35112474-35112512)
[»] chr6 (2 HSPs)
chr6 (32-66)||(30599502-30599536)
chr6 (32-72)||(8866771-8866811)
[»] chr3 (3 HSPs)
chr3 (38-72)||(14352001-14352035)
chr3 (37-74)||(16154961-16154998)
chr3 (37-74)||(37761280-37761317)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 164 - 535
Target Start/End: Complemental strand, 4605646 - 4605278
Alignment:
Q  164 tatacacattgacgtaataaaaaacagggcaaacatgtatagagtggtcgtctgaacgttagttatnnnnnnnngtagatattggttgtctgaatgttag 263  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||  |||| |||||||||||||    
T  4605646 tatacacattgacataataaaaaacagggcaaacatgtatagagtggtcgtctgaacgttagttataaaaaa--gtagatggtggtcgtctgaatgttag 4605549  T
Q  264 ttataagaaagttggttatnnnnnnnnnngtaaattgctaatcttttgtctcatctcgtggacaagtcctggttttcctatatatatcccttttatcttg 363  Q
    |||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4605548 ttataagaaagttggttataaaaaaagaa-taaattgctaatcttttgtctcatctcgtggacaagtcctggttttcctatatatatcccttttatcttg 4605450  T
Q  364 gaagactatcaagctccatatttgtttcccatttataatatagcacagtcacaatttcataagggcatggcattcatttcctctgtgccaacaatggctg 463  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4605449 gaagactatcaagctctatatttgtttcccatttataatatagcacagtcacaatttcataagggcatggcattcatttcctctgtgccaacaatggctg 4605350  T
Q  464 cagttgttactcctactcctaaaacacttgttcactgctcttctctaatccgtagaaatttttccacaggtt 535  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  4605349 cagttgttactcctactcctaaaacacttgctcactgctcttctctaatccgtagaaattcttccacaggtt 4605278  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 4605780 - 4605732
Alignment:
Q  25 gttagtgatattttgaaaaagataagtattgtttgttacaatatgaaaatg 75  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  4605780 gttagtgatatt--gaaaaagataagtattgtttcttacaatatgaaaatg 4605732  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 26067332 - 26067370
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatgaaaatg 75  Q
    |||||||||||||| || |||||||||||||||||||||    
T  26067332 ttgaaaaagataagaatagtttgttacaatatgaaaatg 26067370  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 28477040 - 28477008
Alignment:
Q  40 aaaaagataagtattgtttgttacaatatgaaa 72  Q
    |||||||||||||| ||||||||||||||||||    
T  28477040 aaaaagataagtatagtttgttacaatatgaaa 28477008  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 34303665 - 34303703
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatgaaaatg 75  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34303665 ttgaaaaagataagtattgtttgttacaatatgaaaatg 34303703  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 33857882 - 33857917
Alignment:
Q  40 aaaaagataagtattgtttgttacaatatgaaaatg 75  Q
    |||||||||||||| |||||||||||||||||||||    
T  33857882 aaaaagataagtatagtttgttacaatatgaaaatg 33857917  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 32736634 - 32736666
Alignment:
Q  40 aaaaagataagtattgtttgttacaatatgaaa 72  Q
    |||||||||||||| ||||||||||||||||||    
T  32736634 aaaaagataagtatagtttgttacaatatgaaa 32736666  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 39599193 - 39599230
Alignment:
Q  35 ttttgaaaaagataagtattgtttgttacaatatgaaa 72  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  39599193 ttttgaaaaagataagtatagtttgttacaatatgaaa 39599230  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 7606335 - 7606366
Alignment:
Q  41 aaaagataagtattgtttgttacaatatgaaa 72  Q
    ||||||||||||||||||||||||||||||||    
T  7606335 aaaagataagtattgtttgttacaatatgaaa 7606366  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 7814323 - 7814355
Alignment:
Q  40 aaaaagataagtattgtttgttacaatatgaaa 72  Q
    |||||||||||||| ||||||||||||||||||    
T  7814323 aaaaagataagtatagtttgttacaatatgaaa 7814355  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 27425640 - 27425604
Alignment:
Q  36 tttgaaaaagataagtattgtttgttacaatatgaaa 72  Q
    |||||||||||||||||| |||||||| |||||||||    
T  27425640 tttgaaaaagataagtatagtttgttataatatgaaa 27425604  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 535
Target Start/End: Original strand, 18792685 - 18792805
Alignment:
Q  412 tcacaatttcataagggcatggcattcatttcctctgtgccaacaatggctgcagttgttactcctactcctaaaacacttgttcactgctcttctctaa 511  Q
    |||||||||||||||||||||||||    ||| ||  | |||| |||||| ||||||||||||||| || |||  ||||||||||||  ||||| |||||    
T  18792685 tcacaatttcataagggcatggcatg---ttcttccattccaataatggccgcagttgttactcctgctactactacacttgttcaccactcttttctaa 18792781  T
Q  512 tccgtagaaatttttccacaggtt 535  Q
     ||  |||| |||||| |||||||    
T  18792782 accaaagaagtttttcaacaggtt 18792805  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 20170546 - 20170508
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatgaaaatg 75  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  20170546 ttgaaaaagataagtataatttgttacaatatgaaaatg 20170508  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 38502331 - 38502365
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatgaa 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  38502331 ttgaaaaagataagtatagtttgttacaatatgaa 38502365  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 29750332 - 29750296
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatgaaaa 73  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  29750332 ttgaaaaagataagtatagtttgttgcaatatgaaaa 29750296  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 29754622 - 29754586
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatgaaaa 73  Q
    |||||||||||||||||  ||||||||||||||||||    
T  29754622 ttgaaaaagataagtataatttgttacaatatgaaaa 29754586  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 40859900 - 40859936
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatgaaaa 73  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  40859900 ttgaaaaagataagtatagtttggtacaatatgaaaa 40859936  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 6235454 - 6235422
Alignment:
Q  39 gaaaaagataagtattgtttgttacaatatgaa 71  Q
    |||||||||||||||||||||||||||||||||    
T  6235454 gaaaaagataagtattgtttgttacaatatgaa 6235422  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 1351786 - 1351824
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatgaaaatg 75  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  1351786 ttgaaaaagataagtacagtttgttacaatatgaaaatg 1351824  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 34142910 - 34142878
Alignment:
Q  40 aaaaagataagtattgtttgttacaatatgaaa 72  Q
    |||||||||||||| ||||||||||||||||||    
T  34142910 aaaaagataagtatagtttgttacaatatgaaa 34142878  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 41368762 - 41368730
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatg 69  Q
    ||||||||||||||||| |||||||||||||||    
T  41368762 ttgaaaaagataagtatagtttgttacaatatg 41368730  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 31239146 - 31239181
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatgaaa 72  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31239146 ttgaaaaagataagtatagtttgttacaatatgaaa 31239181  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 35112474 - 35112512
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatgaaaatg 75  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  35112474 ttgaaaaagataagtatagtttgttacaacatgaaaatg 35112512  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 30599536 - 30599502
Alignment:
Q  32 atattttgaaaaagataagtattgtttgttacaat 66  Q
    |||| ||||||||||||||||||||||||||||||    
T  30599536 atatattgaaaaagataagtattgtttgttacaat 30599502  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 8866811 - 8866771
Alignment:
Q  32 atattttgaaaaagataagtattgtttgttacaatatgaaa 72  Q
    |||| |||||||||||| |||| ||||||||||||||||||    
T  8866811 atatattgaaaaagatatgtatagtttgttacaatatgaaa 8866771  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 14352035 - 14352001
Alignment:
Q  38 tgaaaaagataagtattgtttgttacaatatgaaa 72  Q
    |||||||||||||||| ||||||||||||||||||    
T  14352035 tgaaaaagataagtatagtttgttacaatatgaaa 14352001  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 16154998 - 16154961
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatgaaaat 74  Q
    |||||||||||||||||  |||||||||||||||||||    
T  16154998 ttgaaaaagataagtatattttgttacaatatgaaaat 16154961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 37761280 - 37761317
Alignment:
Q  37 ttgaaaaagataagtattgtttgttacaatatgaaaat 74  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  37761280 ttgaaaaatataagtatagtttgttacaatatgaaaat 37761317  T

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