View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3488_low_7 (Length: 514)
Name: NF3488_low_7
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 7 - 494
Target Start/End: Complemental strand, 27215092 - 27214605
Alignment:
| Q |
7 |
gagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
27215092 |
gagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtg |
27214993 |
T |
|
| Q |
107 |
tgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggag |
206 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
27214992 |
tgtccttcagagctccaagtgataggtactgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaatgaagataaatattgttgtcgtggag |
27214893 |
T |
|
| Q |
207 |
attacaataccgaagaaaaatgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27214892 |
attacaataccgaagaaaaatgtccacccacagactattctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcag |
27214793 |
T |
|
| Q |
307 |
cactttcacttgctttgcaagacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaattattgaact |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27214792 |
cactttcacttgctttgcaagacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaatcattgaact |
27214693 |
T |
|
| Q |
407 |
tatgtctttatataaaataagagcacatatataaatgtgcacatatacacacaaacttgtggtatagtataaatcaaaacatagcgtg |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27214692 |
tatgtctttatataaaataagagcacatatataaatgtgcacatatacacacaaacttgtggtatagtataaatcaaaacatagcgtg |
27214605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 7 - 479
Target Start/End: Complemental strand, 27221054 - 27220582
Alignment:
| Q |
7 |
gagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtg |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
27221054 |
gagcaatgtggacggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtg |
27220955 |
T |
|
| Q |
107 |
tgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggag |
206 |
Q |
| |
|
|| |||||||||||||| || |||||| |||||||||||||| |||| |||||||| ||||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
27220954 |
tgcccttcagagctccaagttattggtactgatgggagtgtgattgcctgtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggag |
27220855 |
T |
|
| Q |
207 |
attacaataccgaagaaaaatgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcag |
306 |
Q |
| |
|
||| |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27220854 |
atttcaatactgaagaaaaatgtccacccacaaactactctatgattttcaagaaccaatgccccggtgcttatagctatgcttacgacgataagagcag |
27220755 |
T |
|
| Q |
307 |
cactttcacttgctttgcaagacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaattattgaact |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27220754 |
cactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaattattgaact |
27220655 |
T |
|
| Q |
407 |
tatgtctttatataaaataagagcacatatataaatgtgcacatatacacacaaacttgtggtatagtataaa |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27220654 |
tatgtctttatataaaataagagcacatatataaatgtgcacatatacacacaaacttgtggtatagtataaa |
27220582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 7 - 382
Target Start/End: Original strand, 27443809 - 27444184
Alignment:
| Q |
7 |
gagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
27443809 |
gagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtg |
27443908 |
T |
|
| Q |
107 |
tgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggag |
206 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
27443909 |
tgtccttcagagctccaagtgataggtactgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaatgaagataaatattgttgtcgtggag |
27444008 |
T |
|
| Q |
207 |
attacaataccgaagaaaaatgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27444009 |
attacaataccgaagaaaaatgtccacccacagactattctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcag |
27444108 |
T |
|
| Q |
307 |
cactttcacttgctttgcaagacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27444109 |
cactttcacttgctttgcaagacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaa |
27444184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 358
Target Start/End: Complemental strand, 27432801 - 27432450
Alignment:
| Q |
7 |
gagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
27432801 |
gagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtg |
27432702 |
T |
|
| Q |
107 |
tgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggag |
206 |
Q |
| |
|
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
27432701 |
tgcccttcagagctccaagtgataggttctgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaacgaagataaatattgttgtcgtggag |
27432602 |
T |
|
| Q |
207 |
attacaataccgaagaaaaatgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432601 |
attacaataccgaagaaaaatgtccacccacagactactctatggttttcaagaaccaatgcccgggtgcttatagctatgcttacgacgataagagcag |
27432502 |
T |
|
| Q |
307 |
cactttcacttgctttgcaagacccgactatgccatcaccttctgtccatca |
358 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||| |||||| |
|
|
| T |
27432501 |
cactttcacttgctttgcaagacccgattacgccatcaccttctgcccatca |
27432450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 476
Target Start/End: Complemental strand, 27207721 - 27207253
Alignment:
| Q |
7 |
gagcaatgtggatggattcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtg |
106 |
Q |
| |
|
||||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||| |
|
|
| T |
27207721 |
gagcaatgttgatgggttcaatgtgcccatgtccgtaatgccacaaggtgggagtggtgactgcaaaaccgctagttgtcctaggaacattaatgttgtg |
27207622 |
T |
|
| Q |
107 |
tgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
27207621 |
tgtccttcagagctccaggtgattggttctgatgggagtgtgtttgcttgtaagagcgcttgtttggctttaaaggaagataaatattgttgtcgtggag |
27207522 |
T |
|
| Q |
207 |
attacaataccgaagaaaaatgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcag |
306 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||| | |||||||| || ||||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
27207521 |
atttcaatactgaagaaaaatgtccacccacagactactctaagattttcaaggacgagtgccccggtgcttacagttatgcttacgacgataagagcag |
27207422 |
T |
|
| Q |
307 |
cactttcacttgctttgcaagacccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaattattgaact |
406 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
27207421 |
cattttcacttgctttgcaagacccgactatgcaatcaccttctgcccatcagcttgaactcctcgaccaaacaaatataccattttaaattatttaact |
27207322 |
T |
|
| Q |
407 |
tatgtctttatataaaataagagcacatatataaatgtgcacatatacacacaaacttgtggtatagtat |
476 |
Q |
| |
|
||||||||| | ||||||||| |||||| | |||||||||||||| ||||| | |||||||||||| |
|
|
| T |
27207321 |
tatgtctttgtctaaaataagtgcacatgt-gcaatgtgcacatatatacacacaaacgtggtatagtat |
27207253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 131 - 358
Target Start/End: Complemental strand, 27409847 - 27409620
Alignment:
| Q |
131 |
ggttctgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaagaaaaatgtc |
230 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |||||||| || ||| |||||||||| |||||| |||||||||||||| | ||||| |
|
|
| T |
27409847 |
ggttctgatgggagtgtcgttgcttgtaagagtgcttgcttggcttttaatacagatcaatattgttgtcgtggaagttacaataccgaagcgacatgtc |
27409748 |
T |
|
| Q |
231 |
cacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgcaagacc |
330 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||| || || | ||| ||||||||||||||||| ||| |||||||||||||||||||| || | || |
|
|
| T |
27409747 |
cacctacaaattactctatggttttcaagaaccaatgtcctgatgcctatagctatgcttacgataatacgagcagcactttcacttgctctggtggtcc |
27409648 |
T |
|
| Q |
331 |
cgactatgccatcaccttctgtccatca |
358 |
Q |
| |
|
|||||||| |||| ||| ||||||||| |
|
|
| T |
27409647 |
tgactatgcaatcatcttttgtccatca |
27409620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 320
Target Start/End: Complemental strand, 27388999 - 27388702
Alignment:
| Q |
23 |
ttcaacgtgccaatgtctgtaacgccacaaggtgggagtggtgactgcaaaacgtccagttgtcctgggaacataaatgttgtgtgtccttcagagctcc |
122 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| || ||||| || |||||| | || || ||||| | ||||| || ||||||||| | ||||| | |
|
|
| T |
27388999 |
ttcaacgtgccaatgtccgtaactccacaaggcggaagtggcgattgcaaatcctctagctgtccagcaaacatcaactctgtgtgtcccgcggagcttc |
27388900 |
T |
|
| Q |
123 |
aggtgattggttctgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaacgaggataaatattgttgccgtggagattacaataccgaaga |
222 |
Q |
| |
|
| | | ||||||||||| ||||| |||||||||||||| |||||||||||||| || ||| |||||||||| |||||| || ||| ||||| | |
|
|
| T |
27388899 |
aattaaaaggttctgatggaagtgtcgttgcttgtaagagtgcttgtttggcttttaataccgatcaatattgttgtcgtggaagtttcaacaccgaggc |
27388800 |
T |
|
| Q |
223 |
aaaatgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgct |
320 |
Q |
| |
|
|| ||||||||||||| ||||||| | | || ||||||| || || | |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27388799 |
aacatgtccacccacaaactactccgagatatttgagaaccaatgtccagaagcttatagctatgcttacgatgataagagcagcactttcacttgct |
27388702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 20952617 - 20952530
Alignment:
| Q |
91 |
gaacataaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtggttgcttgtaagagcgcttgtttggcttta |
178 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
20952617 |
gaacattaatattgtgtgtccttaagagctccaagtgaccggttctgatgggagtgtggtggcttgtaaaagcgcttgtttggcttta |
20952530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 359
Target Start/End: Original strand, 27416273 - 27416443
Alignment:
| Q |
189 |
aatattgttgccgtggagattacaataccgaagaaaaatgtccacccacagactactctatggttttcaagaaccagtgcccgggtgcttatagctatgc |
288 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| | | ||| | ||||||||| ||||| ||| |||| ||||||| || || | ||||||||||||||| |
|
|
| T |
27416273 |
aatattgttgtcgtggagattacatcaccgagggtacatgcctacccacagattactccatgttttttgagaaccaatgtcctgatgcttatagctatgc |
27416372 |
T |
|
| Q |
289 |
ttacgacgataagagcagcactttcacttgctttgcaagacccgactatgccatcaccttctgtccatcag |
359 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| ||| | || |||||| | |||| ||| |||||||||| |
|
|
| T |
27416373 |
ttacgatgataatagcagcactttcacttgctctgctggtcctgactatacaatcatcttttgtccatcag |
27416443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University