View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3488_low_8 (Length: 476)
Name: NF3488_low_8
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 97 - 476
Target Start/End: Complemental strand, 1117617 - 1117227
Alignment:
| Q |
97 |
ttaattttatcatataaagtagtaataattttttcataaaaaattaaaatatgtgacggaagtctacatatatttactgcttagaacc------------ |
184 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
1117617 |
ttaattttatcatgcaaagtagtaataattttt-cataaaaa-ttaaaatatgtgacggaagtctacatatatttattgcttagaccgactagtgatgat |
1117520 |
T |
|
| Q |
185 |
--ctttaaagtcatttaaaaaataattgaataattaatcacgttgaatagaattttcttcgaaaacgaaaagacaagaaagaaatgtcatagatttgaat |
282 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1117519 |
gtctttaaagtcatttaaaaa-taatttaataattaatcacgttgaatcgaattttcttcgaaaacgaaaagacaaataagaaatgtcatagatttgaat |
1117421 |
T |
|
| Q |
283 |
tgaatattatgtgttcattttcttggcaacaaggtaatgtaattgtgtactagaagactttctgggaggtggaaactactaaactagtgcctttttcttt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1117420 |
tgaatattatgtgttcattttcttggcaacaaggtaatgtaattgtgtactagaagactttctgggaagtggaaactactaaactagtgcctttttcttt |
1117321 |
T |
|
| Q |
383 |
tgttgacccttttatgttcgtagaattagactccaagcaaagtacaaaacgcgtttgtataagcactttacatgtgtcatatttttggacatcc |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
1117320 |
tgttgacccttttatgttcgtagaattagactccaagcaaagtacaaaacgcgtttgtataagcactttacatgtgtcacatgtttggtcatcc |
1117227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University