View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3488_low_9 (Length: 450)
Name: NF3488_low_9
Description: NF3488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3488_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 6190961 - 6191376
Alignment:
| Q |
18 |
ataaaggatgtcattttctggacaagcttcacaacgtttggagaaactttttcattggttgctagttttatgcattccaatgacgtgtgtaattgttgct |
117 |
Q |
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| T |
6190961 |
ataaaggatgtcattttctggacaagcttcacaacgtttggagaaactttttcattggttgctagttttatgcattccaatgacgtgtgtaattgttgtt |
6191060 |
T |
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| Q |
118 |
gtagctctacgtcatagagaatggactcaagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaaca |
217 |
Q |
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| T |
6191061 |
gtagctctacgtcatagagaatggactctagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaaca |
6191160 |
T |
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| Q |
218 |
ggttgcttttggcggagactctggacttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttcaaagtttcttagatccatt |
317 |
Q |
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| T |
6191161 |
ggttacttttggcggagactctggacttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttcaaagtttcttagatccatt |
6191260 |
T |
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| Q |
318 |
ggtgaattttctttacttattggatcagtggtgtcgggaacaataacctgtcctccttgtatatttggttttccttctgattgcttggtctcatcaaaat |
417 |
Q |
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| T |
6191261 |
ggtgaattttctttacttattggatcagtggtgtcgggaacaataacctg---tccttgtatatttggttttccttctgattgcttggtctcatcaaaat |
6191357 |
T |
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| Q |
418 |
tgtctttcccatcatagtt |
436 |
Q |
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| T |
6191358 |
tgtctttcccatcatagtt |
6191376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 22 - 299
Target Start/End: Original strand, 6183957 - 6184231
Alignment:
| Q |
22 |
aggatgtcattttctggacaagcttcacaacgtttggagaaactttttcattggttgctagttttatgcattccaatgacgtgtgtaattgttgctgtag |
121 |
Q |
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| T |
6183957 |
aggatgtcattttctggacaagcgtcacaacattaggagaaacgttttcatgagatgcttgttttatgtattcaaaagacatatgtaattgctgctgtag |
6184056 |
T |
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| Q |
122 |
ctctacgtcatagagaatggactcaagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaacaggtt |
221 |
Q |
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| T |
6184057 |
ctcgacatcactgagaatggactcaagtgaattttttaataggctttcaaggttatgcaaggcttctcttacagcaa---catcgcttgtggaacaggtt |
6184153 |
T |
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| Q |
222 |
gcttttggcggagactctggacttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttca |
299 |
Q |
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| T |
6184154 |
gcttttggcgaggactctggacttcccaacaggatgctatcaagttcagcaaaagggtcatcatctgatccatcttca |
6184231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 422
Target Start/End: Original strand, 6184282 - 6184372
Alignment:
| Q |
332 |
acttattggatcagtggtgtcgggaacaataacctgtcctccttgtatatttggttttccttctgattgcttggtctcatcaaaattgtct |
422 |
Q |
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| T |
6184282 |
acttatcagatcattggtttcaggaacaatgatttgttctccttgtatgtttggtttttcttctggattcttggtctcatcacaattgtct |
6184372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 413
Target Start/End: Complemental strand, 37454640 - 37454249
Alignment:
| Q |
22 |
aggatgtcattttctggacaagcttcacaacgtttggagaaactttttcattggttgctagttttatgcattccaatgacgtgtgtaattgttgctgtag |
121 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| |||||| |||| |||| ||||| |
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| T |
37454640 |
aggatgccattttctggacaagcttcacaacatttggagaaactttttcatgggttgcttgttttatgcattccaaagacgtgcgtaactgtttttgtag |
37454541 |
T |
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| Q |
122 |
ctctacgtcatagagaatggactcaagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcatcacttgtggaacaggtt |
221 |
Q |
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|||||| ||| ||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||| |
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| T |
37454540 |
ctctacatcacagagaatggactcaagtgatttttccaatagacattcaaggttatgcaaagcttctcttacagcaacatcatcgcttgtggaacaagtt |
37454441 |
T |
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| Q |
222 |
gcttttggcggagactctggacttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttcaaagtttcttagatccattggtg |
321 |
Q |
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|||||||||| ||||||||||||||| |||||| ||||||| ||||| |||| |||||| || ||| ||||||| | || || ||||||| |||| |
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| T |
37454440 |
gcttttggcgaggactctggacttcccttcaggatcctctcaacttcagaaaaaatgtcctcgtcagatccatcttcggatttgctaagatccaccggtg |
37454341 |
T |
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| Q |
322 |
aattttctttacttattggatcagtggtgtcgggaacaataacctgtcctccttgtatatttggttttccttctgattgcttggtctcatca |
413 |
Q |
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|||||||| ||||||| | || ||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
37454340 |
ccttttctttgcttattgaaccattggtgtcaggaacaataacttgtcctccttgtatatttgcttttccttttgattgcttggtctcatca |
37454249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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