View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_high_1 (Length: 469)
Name: NF3489_high_1
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 309
Target Start/End: Complemental strand, 41585903 - 41585599
Alignment:
| Q |
4 |
cgactgaaat-gaaccaatcgaaagatagttgagagatatgtacatatttagtgtttgaaagtactcgaacatgattaagaggaaaccaatgagaaagaa |
102 |
Q |
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| T |
41585903 |
cgactgaaattgaaccaatcgaaagatagttgagagatatgtacatatttagtgtttgaaagtactcgaacatgattaagagggaaccaatgagaaagaa |
41585804 |
T |
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| Q |
103 |
gnnnnnnnngattcacatannnnnnnacataaactatttgatgtttacattaagctacttgcaatgtgcattacgttaatgtggccctcctgactgaagt |
202 |
Q |
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| T |
41585803 |
-aaaaaaaagattcacatatttttttacataaactatttgatgtttacattaagctacttgcaatgtgcattacgttaatgtggccctcctgactgaagt |
41585705 |
T |
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| Q |
203 |
tttatcaatagacttttatgtagtcgagccgtgtgaaggggggattgaataaaagaatgggcagccacattatgatttgaacaaaagcttttgaatacaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41585704 |
tttatcaatagacttttatgtagtcgagccgtgt-aaagggggattgaataaaagaatgggcagccacattatgatttgaacaaaagcttttgaatacaa |
41585606 |
T |
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| Q |
303 |
taagaaa |
309 |
Q |
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||||||| |
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| T |
41585605 |
taagaaa |
41585599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 327 - 437
Target Start/End: Complemental strand, 41585265 - 41585155
Alignment:
| Q |
327 |
tttgagttggaccatacttccccaaatatgagtctacataataaatctttttgaagtctacgcttacaatagaatgttaacaaggaataatttttctcat |
426 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41585265 |
tttgagttagaccatactaccccaaatatgagtctacataataaatctttttgaagtctacgcttacaatagaatgttaacaaggaataatttttctcat |
41585166 |
T |
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| Q |
427 |
aatgttgtgaa |
437 |
Q |
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| T |
41585165 |
aaagttgtgaa |
41585155 |
T |
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