View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_high_12 (Length: 298)
Name: NF3489_high_12
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 43612323 - 43612052
Alignment:
| Q |
19 |
caaggcttcaggaaatagtatctgttgcctcagagtcacaagaacaagtgaggcagagtgaaaaccccaacaacaagaaaaactccaagnnnnnnnnnnn |
118 |
Q |
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| T |
43612323 |
caaggcttcaggaaatagtatctgttgcctcagagtcacaagaacaagtgaggcagagtgaaaaccccaacaacaagaaaaactccaaggatgatgatga |
43612224 |
T |
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| Q |
119 |
nnnnnnnnnagaag---tgggaatttctaaaatacaagtgcctagacagaaacacatccctgtttccaagtctctgcttctagatgcaatcctctctaac |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
43612223 |
tgatgatgatgaagaagtgggaatttctaaaatacaagtgcctagacagaaacacatccctgtttccaagtcccagcttctagatgcaatcctctctaac |
43612124 |
T |
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| Q |
216 |
atgcttcatcaagatactgctcatcactttcgccttctcacctcgtaagtactatcaatttcctatattcat |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43612123 |
atgcttcatcaagatactgctcatcactttcgccttctcacctcgtaagtactatcaatttcctatattcat |
43612052 |
T |
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