View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_high_14 (Length: 290)
Name: NF3489_high_14
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 11749224 - 11748978
Alignment:
| Q |
2 |
tgatggattggtttcccttgatggtattccggatgagttcaaacaaaggctttgcgcattgctttgtgattcgagaaaaatgaatgctcgctttcttgaa |
101 |
Q |
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| T |
11749224 |
tgatggattggtttcccttgatggtattccggatgagttcaaacaaaggctttgtgcgttgctttgcgattcaggaaaaatgaatgctcgctttcttgaa |
11749125 |
T |
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| Q |
102 |
gtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttggactcttcca |
201 |
Q |
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| T |
11749124 |
gtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacataggaagaattcactgcatattttggagtgttggacacttcca |
11749025 |
T |
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| Q |
202 |
cattagaggtatttccatgaaatttttattgctatggtggtagtaaa |
248 |
Q |
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| T |
11749024 |
cggtagaggtatgtccatgaaatttttattgctatggtggtagtaaa |
11748978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 52011416 - 52011204
Alignment:
| Q |
1 |
ctgatggattggtttcccttgatggtattccggatgagttcaaacaaaggctttgcgcattgctttgtgattcgagaaaaatgaatgctcgctttcttga |
100 |
Q |
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| T |
52011416 |
ctgatggaatggtttcgcttgatggtgtttcggatgagctcaaacaaaggcttagcgcgttggtatgtgattcgagaaaaatgaattgtcgctttcttga |
52011317 |
T |
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| Q |
101 |
agtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttggactcttcc |
200 |
Q |
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| T |
52011316 |
actacttctgagtgggtttcctactcatattcggcttaaagattgctcctggttgacagaggaagaattcactaaatgttttggaatgttggacacttcc |
52011217 |
T |
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| Q |
201 |
acattagaggtat |
213 |
Q |
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| T |
52011216 |
atattagaggtat |
52011204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 52001510 - 52001339
Alignment:
| Q |
42 |
aaacaaaggctttgcgcattgctttgtgattcgagaaaaatgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaag |
141 |
Q |
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| T |
52001510 |
aaacaaaggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaactacttctaagtggatttccaaatgtgattcggcttaaag |
52001411 |
T |
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| Q |
142 |
actgctcctggttgacacaggaagaattcactgcatattttggagtgttggactcttccacattagaggtat |
213 |
Q |
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| T |
52001410 |
attgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatattagaggtat |
52001339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 51988159 - 51988294
Alignment:
| Q |
78 |
aaaatgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgctcctggttgacacaggaagaattcactgcat |
177 |
Q |
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|||||||||| || |||||||||| ||||||| ||||||| | | | | || |||||||||| |||| |||||||||| |||||||||| | || |
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| T |
51988159 |
aaaatgaatggtcactttcttgaactacttcttagtgggttttcaaatgtgattcggcttaaagattgcttctggttgacagaggaagaatttataaaat |
51988258 |
T |
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| Q |
178 |
attttggagtgttggactcttccacattagaggtat |
213 |
Q |
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| T |
51988259 |
attttggaacattggacacttccatattagaggtat |
51988294 |
T |
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