View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3489_high_15 (Length: 289)
Name: NF3489_high_15
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 8074998 - 8074723
Alignment:
| Q |
9 |
gtcgaagaatattaccaattgagcacatggacatcaatggaggacctcacaatctttgagactccattatgggatttaattctacaaaatccgactcatt |
108 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8074998 |
gtcgaaaaacattaccaattgagcacatggacatcaatggaggacctcacaatctttgagactccattatgggatttaattttacaaaatccgactcatt |
8074899 |
T |
|
| Q |
109 |
ccaagctattcaatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttga |
208 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8074898 |
ccaagttattcaatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttcgttggttga |
8074799 |
T |
|
| Q |
209 |
tgttggaggtggaaccggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgtatattcttcgac |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
8074798 |
tgttggaggtggaaccggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgtatagtgttcgac |
8074723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 8066555 - 8066288
Alignment:
| Q |
17 |
atattaccaattgagcacatggacatcaatggaggacctcacaatctttgagactccattatgggatttaattctacaaaatccgactcattccaagcta |
116 |
Q |
| |
|
|||||| ||||||| || ||||||||| | |||||| ||||||||||| || ||| ||||||||||||| || | ||||||| || || | | || || |
|
|
| T |
8066555 |
atattatcaattgaccaaatggacatctaaggaggatctcacaatcttcgatactacattatgggatttcatgcaacaaaattcggcttacgcggagtta |
8066456 |
T |
|
| Q |
117 |
ttcaatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggag |
216 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8066455 |
ttcaatgatgctatggagagtgactctaatatgatgaggtttgcaatgagtgattgcaaatcagtttttgagggcataacttctttggttgatgttggag |
8066356 |
T |
|
| Q |
217 |
gtggaaccggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgtatattcttcgac |
284 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |||||| |
|
|
| T |
8066355 |
gtggaaccggaaacacggttaaaattatttctgaggcgtttcctacgttaaaatgtatagtgttcgac |
8066288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 4177512 - 4177445
Alignment:
| Q |
207 |
gatgttggaggtggaaccggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgtat |
274 |
Q |
| |
|
|||||||| ||||||| |||| ||||| |||||||||||||||| | ||||||| ||| |||||||| |
|
|
| T |
4177512 |
gatgttggtggtggaaatggaaccactggtaaaattatttgtgagacttttcctaagttgaaatgtat |
4177445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 34951456 - 34951317
Alignment:
| Q |
120 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtg |
219 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||| || |||| ||||| || || |||||||| || | ||| |||||||||||||| |||| |
|
|
| T |
34951456 |
aatgatgctatggaaagtgattctcatgttgtgaggttggctttgagagattgtaattctgtttttgaagggattggttcattggttgatgttggtggtg |
34951357 |
T |
|
| Q |
220 |
gaaccggaaacactgttaaaattatttgtgaggcgtttcc |
259 |
Q |
| |
|
|||| |||||||| | ||| |||||||||||||||||||| |
|
|
| T |
34951356 |
gaactggaaacacagctaagattatttgtgaggcgtttcc |
34951317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 34946985 - 34946846
Alignment:
| Q |
120 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtg |
219 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||| || |||| ||||| || || |||||| | || | ||| |||||||||||||| |||| |
|
|
| T |
34946985 |
aatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttcaagggattggttcattggttgatgttggtggtg |
34946886 |
T |
|
| Q |
220 |
gaaccggaaacactgttaaaattatttgtgaggcgtttcc |
259 |
Q |
| |
|
|||| |||||||| | ||| ||||| |||||||||||||| |
|
|
| T |
34946885 |
gaactggaaacacagctaagattatatgtgaggcgtttcc |
34946846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University