View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_high_16 (Length: 280)
Name: NF3489_high_16
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 9742485 - 9742392
Alignment:
| Q |
69 |
atcgtaggacgaggtggttgtgtagaaggagacaaaataggttgtagtcttgtaggagtaggcggcgctttcataggagtttgctttggtggtg |
162 |
Q |
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| T |
9742485 |
atcgttggatgaggtggttgggtagaaggagacaaaataggttgtagtcttgtaggagtaggcggcgctttcataggagtttgctttggtggtg |
9742392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9742580 - 9742504
Alignment:
| Q |
1 |
tcattggaccaattggttgtttagacggagtcaaggtttgtggttgtgtagtaggtgtagatggtgaaatcgtagga |
77 |
Q |
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| T |
9742580 |
tcattggacgaattggttgtttagacggagtcaaggtttgtggtggtgtggtaggtgtagatggtgaaattgtagga |
9742504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 9742766 - 9742664
Alignment:
| Q |
70 |
tcgtaggacgaggtggttgtgtagaaggagacaaaataggttgtagtcttgtaggagtaggcggcgctttcataggagtttgctttggtggtggtgtcat |
169 |
Q |
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| T |
9742766 |
tcgttggacgaggtggttgtgtgg---gagacaagataggttgtagtgtggtaggagtaggcggcgctttcataggagcctgctttgttggtggtgtcat |
9742670 |
T |
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| Q |
170 |
tgaatg |
175 |
Q |
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|||||| |
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| T |
9742669 |
tgaatg |
9742664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 9742314 - 9742277
Alignment:
| Q |
243 |
ttacgacccgaatgggcagagacaagagtggagaaaaa |
280 |
Q |
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| T |
9742314 |
ttacgacccgaatgggcagaggcaagagtggagaaaaa |
9742277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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