View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_high_24 (Length: 243)
Name: NF3489_high_24
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 36078119 - 36077931
Alignment:
| Q |
1 |
aaaactagaataactattccatataaataccactcccaacacattcaggtatattcaacaattcattagtcaaattcattatatgtattaacgtatcaaa |
100 |
Q |
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| T |
36078119 |
aaaactagaataactattccatataaataccactcccaacacattcaggtatattcaacaattcattagtcaaatccattatatgtattaacgtatcaaa |
36078020 |
T |
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| Q |
101 |
gaatgaacttggagaatgaatctacgaatcattatttgtcttcacaatccaataaccaaaattctccatcaaaaccaaactcacacaag |
189 |
Q |
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| T |
36078019 |
gaatgaacttggagaatgaatctacgaatcattatttgtcttcacaatccaataaccaaaattctccatcaaaaccaaactcacacaag |
36077931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 36074717 - 36074656
Alignment:
| Q |
94 |
tatcaaagaatgaacttggagaatgaatctacgaatcattatttgtcttcacaatccaataa |
155 |
Q |
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| T |
36074717 |
tatctaagaatgaacttggagaatgaatctatgagtcattatctgtcttcaccgtccaataa |
36074656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 36074812 - 36074773
Alignment:
| Q |
21 |
atataaataccactcccaacacattcaggtatattcaaca |
60 |
Q |
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| T |
36074812 |
atataaatactactcccaacacattcaggtatattcaaca |
36074773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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