View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3489_high_3 (Length: 413)
Name: NF3489_high_3
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 23 - 335
Target Start/End: Complemental strand, 8074603 - 8074291
Alignment:
| Q |
23 |
tagatatttcactttcatgcactgatctggacaacaccaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagcttt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8074603 |
tagatatttcactttcatgcactgatctggacaataccaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagcttt |
8074504 |
T |
|
| Q |
123 |
gattccatagagtaaatgcagcacctagcaggaaaagtctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8074503 |
gattccatagagtaaatgcagcacctagcaggaaaagtctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaat |
8074404 |
T |
|
| Q |
223 |
gacccttacctcctaagaacaatgctttaccacccaaatcactcaccttaatccacatcattgtatcgaaatccatctcgtagatattcaaatgtttcgc |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8074403 |
gacccttacctcctaagaacaatgctttatcacccaaatcactcaccttaatccacatcattgtatcgaaatccatctcgtagatatttaaatgtttcgc |
8074304 |
T |
|
| Q |
323 |
aggaacaaaatca |
335 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8074303 |
aggaacaaaatca |
8074291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 332 - 402
Target Start/End: Complemental strand, 8073876 - 8073806
Alignment:
| Q |
332 |
atcatgtatcctccagtgcacccaacaaaggatttgttagaagtattatccaattcaaacatagtattctt |
402 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8073876 |
atcatgtatcctccggtgcacccaacaaaggatttgttagaagtattatccaattcaaacgtagtattctt |
8073806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 40954390 - 40954703
Alignment:
| Q |
20 |
gtctagatatttcactttcatgcactgatctggacaacaccaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagc |
119 |
Q |
| |
|
||||||||| ||||| |||||||| || ||| | ||| ||||||||||||| ||||| |||||||| |||||||||| | || ||||||||||||||| |
|
|
| T |
40954390 |
gtctagatacttcaccttcatgcattggtctaggcaataccaaccaagtgaggaaacatgatcaccgaattttcccacaattgggatcatgtgtattagc |
40954489 |
T |
|
| Q |
120 |
tttgattccatagagtaaatgcagcacctagcaggaaaagtctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcac |
219 |
Q |
| |
|
|||| ||||| || |||||||| ||||| ||||||||||||| ||||||||||||| | |||| |||||| | ||||||||| ||||||||| | ||| |
|
|
| T |
40954490 |
tttgcctccatcgaataaatgcaacacctcgcaggaaaagtcttgagataatacaca--actgctaagatgtacgcatttacccagtcttctcacatcac |
40954587 |
T |
|
| Q |
220 |
aatgacccttacctcctaagaacaatgctttaccacccaaatcactcaccttaatccacatcattgtatcgaaatccatctcgtagatattcaaatgttt |
319 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| |||| ||||| | ||||||||||||| ||||||||||||||| |||| ||||||||||||||| || |
|
|
| T |
40954588 |
aatgacccttaactcctaagaataatgctttatcacctaaatcgcccaccttaatccacctcattgtatcgaaattcatcatgtagatattcaaatgctt |
40954687 |
T |
|
| Q |
320 |
cgcaggaacaaaatca |
335 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40954688 |
tgcaggaacaaaatca |
40954703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 58 - 316
Target Start/End: Complemental strand, 40955455 - 40955197
Alignment:
| Q |
58 |
accaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaa |
157 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||| |||| | || |||||||||||||||||| ||||| | |||||||| ||||| |||||||| |
|
|
| T |
40955455 |
accaaccaagtgaggaaacctgatcaccggatttttccacaattgggatcatgtgtattagcttttcctccatcaaataaatgcaacacctcgcaggaaa |
40955356 |
T |
|
| Q |
158 |
agtctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaatgacccttacctcctaagaacaatgctttaccaccc |
257 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
40955355 |
agtctcgagataatacacaaaattgctaagatgtccccatttacccagtcttctcacatcacaatgacccttacctcctaagaataattctttatcacct |
40955256 |
T |
|
| Q |
258 |
aaatcactcaccttaatccacatcattgtatcgaaatccatctcgtagatattcaaatg |
316 |
Q |
| |
|
| ||| | ||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
40955255 |
agatcgcccaccttaatccacctcattgtatcgaaatttatctcgtagattttcaaatg |
40955197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University