View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_high_4 (Length: 396)
Name: NF3489_high_4
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 35439445 - 35439815
Alignment:
| Q |
15 |
aaatcttctttggcatcagatctctggtttcagtagttgagataatcttgcggagatactgaatatctgtgacnnnnnnntttaatcaatcataaatata |
114 |
Q |
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| T |
35439445 |
aaatcttctttggcatcagatctctggtttcagtagttgagataatcttccggagatactgaatatctgtgacaaaaaaatttaatcaatcataaatata |
35439544 |
T |
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| Q |
115 |
tatttgtattatacacatctatccattgaagccatcatcagcatacttgttgcgatcacagtacagacactgcagtttgatacttcaatttgcttgagaa |
214 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35439545 |
tatttgtattatacacatctatccattgaagctatcatcagcatacttgttgcgatcactgtacagacactgcagtttgatacttcaatttgcttgagaa |
35439644 |
T |
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| Q |
215 |
ggtaagcatgttcttgaatccttatttacttctaatattcatctatatgtatgttaaaattttgtcagccattctaaactatgcatatcatcaattttaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35439645 |
ggtaagcatgttcttgaatccttatttacttctaatattcatctatatgtatgttaaaattttgtcagccattctaaactatgcatatcatcaattttaa |
35439744 |
T |
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| Q |
315 |
ataaggaaaatagatcactaattgtttcacgcgtagctctcattcactgtacatggactagtttcttctct |
385 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35439745 |
ataaggaaaatagattactaattgtttcacgcgtagctctcgttcactgtacatggactagtttcttctct |
35439815 |
T |
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