View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_high_8 (Length: 357)
Name: NF3489_high_8
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 36896800 - 36897138
Alignment:
| Q |
1 |
acagtaggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaacttgacacctag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36896800 |
acagtaggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaacttgacacctag |
36896899 |
T |
|
| Q |
101 |
gtggttgagaatgttgaactgacccacctcttcctttctttgaaccagaagaagaaggagaaccagcagcaatggtagtactnnnnnnnnnnnnnnnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36896900 |
gtggttgagaatgttgaactgacccacctcttcctttctttgaaccagaagaagaaggagaaccagcagcaatggtagtactagcagcagcagcagaagc |
36896999 |
T |
|
| Q |
201 |
nnnnntaagagctgtatcttcgaaatagattcgttggccaaatttcaagccattaagtgaggactcttctgaagaagagttgcctcctgaatccattggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36897000 |
agcagtaagagctgtatcttcgaaatagattcgttggccaaatttcaagccattaagtgaggactcttctgaagaagagttgcctcctgaatccattggt |
36897099 |
T |
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| Q |
301 |
gtgtaaggtttggtggtggttgctagattgtgctcattg |
339 |
Q |
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| T |
36897100 |
gtgtaaggtttggtggtggttgctagattgtgctcattg |
36897138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 22682224 - 22682327
Alignment:
| Q |
1 |
acagtaggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaacttgacacctag |
100 |
Q |
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|||| ||| ||||| || ||||||| ||||||||| ||||||||||| ||||| |||||| || ||||||||| |||||| ||||||||||||||||||| |
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| T |
22682224 |
acagaaggagattttgaatgcatgcaacaaactttatgtctagaataataagccttagcaccactcagatctactttacaaccttcaacttgacacctag |
22682323 |
T |
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| Q |
101 |
gtgg |
104 |
Q |
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|||| |
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| T |
22682324 |
gtgg |
22682327 |
T |
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