View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_high_9 (Length: 354)
Name: NF3489_high_9
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 338
Target Start/End: Complemental strand, 9742274 - 9741948
Alignment:
| Q |
12 |
ggaagctaagggggagcattatgctaatagatgcagcaccctttaaccccattttgcaaacaaatatgctcaaatgatgtattgtaaggcttgcttgtgg |
111 |
Q |
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| T |
9742274 |
ggaagctaagggggagcattatgctgatagatgcagcaccctttaaccccattttgcaaacaaatatcctcaaatgatgtattgtaaggcttgcttgtgg |
9742175 |
T |
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| Q |
112 |
tagatgaatatatttggagttctgtggcaatatttataggcagaagagttttggtttttacttgattaattatttttgagtaagttaactcctctctcta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9742174 |
tagatgaatatatttggagttctgtggcaatatttataggcaaaagagttttggtttttacttgattaattatttttgagtaagttaactcct--ctcta |
9742077 |
T |
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| Q |
212 |
tcaattctattaattcattttgcctaataaattagttatgagttttgactttcaattgcagctatacttgtacttgtatgttgcatactttgtagatcta |
311 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9742076 |
tcaattctattaattcattttgcctaattaattagttatgagttttgactttcaattgcagctatacttgtacttgtatgttgcatactttgtagatcta |
9741977 |
T |
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| Q |
312 |
tcccag--taatatgtacgagatcatatt |
338 |
Q |
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|||||| ||||||||||||||||||||| |
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| T |
9741976 |
tcccagtctaatatgtacgagatcatatt |
9741948 |
T |
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