View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_low_11 (Length: 326)
Name: NF3489_low_11
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 11749493 - 11749202
Alignment:
| Q |
19 |
gcatcattcattcacattcaacaaattgatgatgatgatgatagcagtgaagatgatggtgttttgcatgaaattaatgatggttctccaactcctttct |
118 |
Q |
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| T |
11749493 |
gcatcattcattcccattcaacaaattgatgatgattatgatagtagtgaagatgatggtgttttgcgtgaaattgatgatggttctccaactcctttct |
11749394 |
T |
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| Q |
119 |
ccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaattgggtttgttgatgaatcccttatttgagttccgaaaaggaatggagaaga |
218 |
Q |
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| T |
11749393 |
ccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaatggggtttgttgatgaatcccttatttgggttccgaaaaggaatggagaaga |
11749294 |
T |
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| Q |
219 |
tttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaagcccttgctaaccatgctgatggattggtttcccttgatg |
310 |
Q |
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| T |
11749293 |
tttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaagcccttgctaatcatgttgatggattggtttcccttgatg |
11749202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 95 - 310
Target Start/End: Complemental strand, 52011608 - 52011393
Alignment:
| Q |
95 |
atgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaattgggtttgttgatgaatcccttatttg |
194 |
Q |
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| T |
52011608 |
atgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaaggggttgttaaggaatcctttatttg |
52011509 |
T |
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| Q |
195 |
agttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaagcccttgctaaccatgctgatgga |
294 |
Q |
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| T |
52011508 |
ggttccgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgatgga |
52011409 |
T |
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| Q |
295 |
ttggtttcccttgatg |
310 |
Q |
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| T |
52011408 |
atggtttcgcttgatg |
52011393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 262
Target Start/End: Original strand, 51987880 - 51988057
Alignment:
| Q |
85 |
catgaaattaatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaattgggtttgttgatgaat |
184 |
Q |
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| T |
51987880 |
catgaaactgatgatggttctccaacacctttctctaaagcaattaaagctattcaagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaat |
51987979 |
T |
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| Q |
185 |
cccttatttgagttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgt |
262 |
Q |
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| T |
51987980 |
ctcttatttggcattcaaaattcaatgaagaagatttggaaaagagaagctttagtgttccttcattgcaagaattgt |
51988057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 270
Target Start/End: Complemental strand, 52001753 - 52001568
Alignment:
| Q |
85 |
catgaaattaatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaattgggtttgttgatgaat |
184 |
Q |
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|||||| || |||||| |||||||||||||||||| || || ||||||||||||||||||||||| | |||| ||| |||| |||||||| ||||||| |
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| T |
52001753 |
catgaagttgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgtcgatgaat |
52001654 |
T |
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| Q |
185 |
cccttatttgagttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaa |
270 |
Q |
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| T |
52001653 |
cccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaa |
52001568 |
T |
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