View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_low_13 (Length: 295)
Name: NF3489_low_13
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 49899987 - 49899749
Alignment:
| Q |
11 |
cagagaccaagaggaaggaaacatatgagagagtgagacagtgcgcgtgcgttaattgtttttgcgcatgatcctataactcatcctaagaacattattt |
110 |
Q |
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| T |
49899987 |
cagaaaccaagaggaaggaaacatatgagagagtgagacagtgcgcgtgcgttaattgtttttgcgcatgatcctataactcatcctaagaacattattt |
49899888 |
T |
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| Q |
111 |
aattatgtaaacagtgaaaactgaaagagcatgggtctggaacatttgtacatttctgggtcaaggttcaaagaataccgcgtgagtgagtgagtgagtc |
210 |
Q |
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| T |
49899887 |
aattatgtaaatagtgaaaactgaaagagcatgggtctggaacatttgtacatttctgggtcaaggttcaaagaataccgcgtgagtgagtgagtgagtc |
49899788 |
T |
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| Q |
211 |
actatttaggtttatataattccaactaactatgacaac |
249 |
Q |
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| T |
49899787 |
actatttaggtttatataatcccaactaactatgacaac |
49899749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 35284167 - 35284195
Alignment:
| Q |
249 |
ccatagttttaaaaatcggatcggtcatc |
277 |
Q |
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| T |
35284167 |
ccatagttttaaaaatcggatcggtcatc |
35284195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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