View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_low_18 (Length: 263)
Name: NF3489_low_18
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 45182003 - 45182159
Alignment:
| Q |
17 |
aagaagttggtacaagaaaaacttgtgatgatcaggagtaaggtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaaga |
116 |
Q |
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| T |
45182003 |
aagaagttggtacaagaaaaacttgtgatgatcaggagtaaggtcattatttgccttg--------atgtaaatcagagtccatcaactcaaaaacaaga |
45182094 |
T |
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| Q |
117 |
taaatatctttgaactcacgaagaggagaaggaggaagcataatatgcgtaatttgtactatatc |
181 |
Q |
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| T |
45182095 |
taaatatctttgaactcacgacgaggagaaggaggaagcataatatgcgtaatttgtactatatc |
45182159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 45175191 - 45175393
Alignment:
| Q |
18 |
agaagttggtacaagaaaaacttgtgatgatcaggagtaaggtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagat |
117 |
Q |
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| T |
45175191 |
agaagttgatacaagaaaaattggtggtgctgaggagtaagatcatgatttgccttaattacttgatgtagatcagattccatcaactcaaagacaacat |
45175290 |
T |
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| Q |
118 |
aaatatctttgaactcacgaagaggagaaggaggaagcataatatgcgtaatttgtactatatcaggatgatgttggacttggagcaagcgcaggagctt |
217 |
Q |
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| T |
45175291 |
agatatccctaaactcacggcgtg---aaggaggaagcataatatgcctaatttcaacaatatcaggatgc-------ct--gagcaagcgcaagagctt |
45175378 |
T |
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| Q |
218 |
gatttctcttaggat |
232 |
Q |
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| T |
45175379 |
gatttctcttaggat |
45175393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 48725084 - 48725013
Alignment:
| Q |
59 |
gtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagataaatatctttgaa |
130 |
Q |
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| T |
48725084 |
gtcatcatttgctttgatgacttgatgtaaatctgattccataagttcaaaaacaacatatatatctttgaa |
48725013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 7253146 - 7253216
Alignment:
| Q |
60 |
tcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagataaatatctttgaa |
130 |
Q |
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| T |
7253146 |
tcatcatttgctttgatgacctgatgtaaatcagattccatgagttcaaatacaacatatatatctttgaa |
7253216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 30813349 - 30813281
Alignment:
| Q |
59 |
gtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagataaatatcttt |
127 |
Q |
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| T |
30813349 |
gtcatcattagctttgatgacttgatggagatcagactccatgagctcaaagacaacataaatatcttt |
30813281 |
T |
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