View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_low_19 (Length: 261)
Name: NF3489_low_19
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 47764690 - 47764933
Alignment:
| Q |
14 |
agagagcagtgtccaaatcaaaaagaggcaattgtgtggggtggtgatttcactttatggtactcgaatagcttaatttttgggctcttaaaaacttcaa |
113 |
Q |
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| T |
47764690 |
agagaacaatgtccaaatcaaaaagaggcgattgtgtggggtggtgatttcactttgtggtacttgaatcgctcaatttttgggctcttgaaaacttcac |
47764789 |
T |
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| Q |
114 |
ctacacgatatttgtttttagatagcaatgcaagtgatgcggatcagtacaagcaagcactgagtaacttgatgcaaaatctaacggccaaagctgcatc |
213 |
Q |
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| T |
47764790 |
ctacactatatttggttttagaaaggaatgcaagtgacgcagatcagtacaagaaagcattgagtaacttgatgacaaatctaatagaaaaggctgcatc |
47764889 |
T |
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| Q |
214 |
aggtgactctcgtcgtaagtatgatgcagatagtgtgtatgatg |
257 |
Q |
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| T |
47764890 |
aggtgactctcgtcgtaagtatgatgcagatagtgtgtatgatg |
47764933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 47773079 - 47773315
Alignment:
| Q |
13 |
cagagagcagtgtccaaatcaaaaagaggcaattgtgtggggtggtgatttcactttatggtactcgaatagcttaatttttgggctcttaaaaacttca |
112 |
Q |
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| T |
47773079 |
cagagagcagtgtccaaaccaaaaagaggcaattgtgtggggtggtgatttcactttgtggtactcgaatcgctcaatttttgggctcttggaaacttca |
47773178 |
T |
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| Q |
113 |
actacacgatatttgtttttagatagcaatgcaagtgatgcggatcagtacaagcaagcactgagtaacttgatgcaaaatctaacggccaaagctgcat |
212 |
Q |
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| T |
47773179 |
cctacactctatttgtatttacaacggaatacaagttatgtggatcagtacatgcaagcagtggctaacttgatgcgaaatctaacggccaaagctgctt |
47773278 |
T |
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| Q |
213 |
caggtgactctcgtcgtaagtatgatgcagatagtgt |
249 |
Q |
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| T |
47773279 |
taggtgactcgcgtcgtaagtacgaagcagatagtgt |
47773315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 27371673 - 27371618
Alignment:
| Q |
21 |
agtgtccaaatcaaaaagaggcaattgtgtggggtggtgatttcactttatggtac |
76 |
Q |
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| T |
27371673 |
agtgtccaaatcaaaaagaggccattttgtggggtgatgatgtcactttaaggtac |
27371618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 27371504 - 27371444
Alignment:
| Q |
190 |
aaatctaacggccaaagctgcatcaggtgactctcgtcgtaagtatgatgcagatagtgtg |
250 |
Q |
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| T |
27371504 |
aaatctaacagacaaagctgcatctggcgactctcgtcgcaaatatgaggcagatggtgtg |
27371444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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