View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_low_22 (Length: 250)
Name: NF3489_low_22
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_low_22 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 20433954 - 20433719
Alignment:
| Q |
15 |
gacaagtgataataatttgataagatgacataatgaaatgaaatcatatgtgtcggtgtagtattaatgtcagacatgatacatatctatattagtgctt |
114 |
Q |
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| T |
20433954 |
gacaagtgataataatttgataagatgacaaaatgaaatgtaatcatatgtgtcggtgtagaattaatgtcagacatgatacatatctatattagtgctt |
20433855 |
T |
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| Q |
115 |
catagctcaggagactgcaacagaaaagcattctatgagcaaactaaacacttagatatcgactacactacacattttctttctaacttgtggttttcta |
214 |
Q |
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| T |
20433854 |
catagctcaggagactgcaacagaaaagcattctatgagaaaactaaacacttagatatcgactacactacacattttctttctaacttgtggttttcta |
20433755 |
T |
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| Q |
215 |
cttgtgatttgattatagtgaatttctacttgcaat |
250 |
Q |
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| T |
20433754 |
cttgtgatttgattatagtgaatttctacttgcaat |
20433719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 20427616 - 20427520
Alignment:
| Q |
149 |
atgagcaaactaaacacttagatatcgactacactacacattttctttctaacttgtggttttctacttgtgatttgattatagtgaatttctacttgca |
248 |
Q |
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| T |
20427616 |
atgagcaaactaaaaacttagatatcgacttcac-----atttcctttctaagttgtggttttctacttgtgatttgattatagtgaatttctacttgca |
20427522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 20427695 - 20427620
Alignment:
| Q |
15 |
gacaagtgataataatttgataagatgacataatgaaatgaaatcatatgtgtcggtgtagtattaatgtcagaca |
90 |
Q |
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| T |
20427695 |
gacaagtgataataatttgagaagatgacatatttaaatgtaatcatatgtgtcggtgtagtattcttgtcagaca |
20427620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 38134459 - 38134410
Alignment:
| Q |
22 |
gataataatttgataagatgacataatgaaatgaaatcatatgtgtcggt |
71 |
Q |
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| T |
38134459 |
gataataatttgagaaaatgacataattcaatgtaatcatatgtgtcggt |
38134410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 21478690 - 21478768
Alignment:
| Q |
23 |
ataataatttgataagatgacataatgaaatgaaatcatatgtgtcggtgtagtattaatgtcagacatgatacatatc |
101 |
Q |
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| T |
21478690 |
ataataatttcacaagatgacataaatcaatgtaatcatatgtgttggtgttgttttggtgtcagacatgaaacatatc |
21478768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 20691324 - 20691376
Alignment:
| Q |
21 |
tgataataatttgataagatgacataatgaaatgaaatcatatgtgtcggtgt |
73 |
Q |
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| T |
20691324 |
tgataataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgt |
20691376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 5307066 - 5307117
Alignment:
| Q |
21 |
tgataataatttgataagatgacataatgaaatgaaatcatatgtgtcggtgt |
73 |
Q |
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| T |
5307066 |
tgataataatttgaaaa-atgacataattcaatgaaatcataagtgtcggtgt |
5307117 |
T |
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