View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3489_low_27 (Length: 237)
Name: NF3489_low_27
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 20433395 - 20433271
Alignment:
| Q |
97 |
tatatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgaca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20433395 |
tatatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaaaatgaca |
20433296 |
T |
|
| Q |
197 |
attgtgcttaaatgatatatcaatg |
221 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
20433295 |
attgtgcttaaatgatatatcaatg |
20433271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 20439868 - 20439744
Alignment:
| Q |
97 |
tatatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgaca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20439868 |
tatatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaaaatgaca |
20439769 |
T |
|
| Q |
197 |
attgtgcttaaatgatatatcaatg |
221 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
20439768 |
attgtgcttaaatgatatatcaatg |
20439744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 20445594 - 20445471
Alignment:
| Q |
98 |
atatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgacaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20445594 |
atatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaaaatgacaa |
20445495 |
T |
|
| Q |
198 |
ttgtgcttaaatgatatatcaatg |
221 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
20445494 |
ttgtgcttaaatgatatatcaatg |
20445471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 20427178 - 20427063
Alignment:
| Q |
97 |
tatatatcaatggtcacggatgctcaccaatgctcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgaca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20427178 |
tatatatcaatggtcacggatgctcaccaatgctcaattattttctatttcctaatgtttttgttttctgtcttaaataaaactttagaaaaacatgaca |
20427079 |
T |
|
| Q |
197 |
attgtgcttaaatgat |
212 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20427078 |
attgtgcttaaatgat |
20427063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 20433534 - 20433460
Alignment:
| Q |
1 |
aggaaacatgcaaaagttagcatgctgagttgaactaaaaatggacgggaaataacagagtaaacaggctaggtc |
75 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20433534 |
aggaaacaagcaacagttagcatgctgagttgaactaaaaatggacgggaaataacagagtaaacaggctaggtc |
20433460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 20440007 - 20439933
Alignment:
| Q |
1 |
aggaaacatgcaaaagttagcatgctgagttgaactaaaaatggacgggaaataacagagtaaacaggctaggtc |
75 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20440007 |
aggaaacaagcaacagttagcatgctgagttgaactaaaaatggacgggaaataacagagtaaacaggctaggtc |
20439933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 20445730 - 20445656
Alignment:
| Q |
1 |
aggaaacatgcaaaagttagcatgctgagttgaactaaaaatggacgggaaataacagagtaaacaggctaggtc |
75 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20445730 |
aggaaacaagcaacagttagcatgctgagttgaactaaaaatggacgggaaataacagagtaaacaggctaggtc |
20445656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 20410397 - 20410319
Alignment:
| Q |
130 |
tcaattcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaacatgacaattgtgcttaaatgat |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
20410397 |
tcaattcttttctatttcctattgtttttgttttctgtcataaataaatcttgagaa----atgacaattgtgcttaattgat |
20410319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 20427285 - 20427237
Alignment:
| Q |
27 |
gagttgaactaaaaatggacgggaaataacagagtaaacaggctaggtc |
75 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20427285 |
gagttgaactacaaatggacgggaaataacagagtaaacatgctaggtc |
20427237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 20372830 - 20372867
Alignment:
| Q |
184 |
gaaaaacatgacaattgtgcttaaatgatatatcaatg |
221 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20372830 |
gaaaaaaatgacaattgtgcttaaatgatatatcaatg |
20372867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University