View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_low_32 (Length: 218)
Name: NF3489_low_32
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_low_32 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8074538 - 8074755
Alignment:
| Q |
1 |
atggtatttttaggattcaatgtaccaagaatcaggaaactaagccatttaataatgcatgacttacaaaactgcatacataccttgagtaaaattgcat |
100 |
Q |
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| T |
8074538 |
atggtatttttaggattcaatgtatcaagaatcaggaaactaagctatttaataatgcatgacttacaaaactgcatacataccttgagtaaaattgcat |
8074637 |
T |
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| Q |
101 |
cagcttgagggatagattcaaacatgtttccgcctacaaaactcagatggttatttcccgttaatccttctaccacgtttggaaggtcgaacactataca |
200 |
Q |
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| T |
8074638 |
cagcttgagggatagattcaaacatgtttccgcctacaaaactcagatagttatttcccgttaatccttctaccacgtttggaaggtcgaacactataca |
8074737 |
T |
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| Q |
201 |
ttttaacgtaggaaacgc |
218 |
Q |
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| T |
8074738 |
ttttaacgtaggaaacgc |
8074755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 81 - 218
Target Start/End: Original strand, 8066183 - 8066320
Alignment:
| Q |
81 |
taccttgagtaaaattgcatcagcttgagggatagattcaaacatgtttccgcctacaaaactcagatggttatttcccgttaatccttctaccacgttt |
180 |
Q |
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| T |
8066183 |
tacctttagtaaaattgcatcagcttgagggatagattcgaacatatttccgccgacaaaactcagatagttatttcccgttaatccttctaccacgttt |
8066282 |
T |
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| Q |
181 |
ggaaggtcgaacactatacattttaacgtaggaaacgc |
218 |
Q |
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| T |
8066283 |
ggaaggtcgaacactatacattttaacgtaggaaacgc |
8066320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 34951186 - 34951251
Alignment:
| Q |
80 |
ataccttgagtaaaattgcatcagcttgagggatagattcaaacatgtttccgcctacaaaactca |
145 |
Q |
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| T |
34951186 |
ataccttgagcaaaacggtatcagcttgagggatagatttaaacatgttcccaccaacaaaactca |
34951251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 34946715 - 34946780
Alignment:
| Q |
80 |
ataccttgagtaaaattgcatcagcttgagggatagattcaaacatgtttccgcctacaaaactca |
145 |
Q |
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| T |
34946715 |
ataccttgagcgaaacagcatcagcttgagggatggatttaaacatgttcccaccaacaaaactca |
34946780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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