View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_low_33 (Length: 213)
Name: NF3489_low_33
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 7633738 - 7633922
Alignment:
| Q |
20 |
agatgcctacatatctaactatgctacaataaaagacaagaaaatctcaagaattttaaacatgaatacgacccattagattttttatgctatgaaaagt |
119 |
Q |
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| T |
7633738 |
agatgcctacatatccaactatgctacaataaaagacaagaaaatctcaagaattttaaacatgaatacgacccattagatttttcatgctatgaaaagt |
7633837 |
T |
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| Q |
120 |
caatttgttgttccattcataaacaataagaatcattattattatttttgggatactttattaccactcgttatttcatctcact |
204 |
Q |
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| T |
7633838 |
caatttgttgttccattcataaacaataagaatcattattattatttttgggatactttattaccactcgttatttcatctcact |
7633922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 42146875 - 42146688
Alignment:
| Q |
20 |
agatgcctacatatctaactatgctacaataaaagacaagaaaa-tctcaagaattttaaacatgaatacgacccattagattt-tttatgctatgaaaa |
117 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| ||||| || |||||| |
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| T |
42146875 |
agatgcctacatagctaacaatgctacaataaaagacaacaaaaatctcaagaattttaaacatgaatacgaccctttagatttatttatactgtgaaaa |
42146776 |
T |
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| Q |
118 |
gtcaatttgttgttccattcataaacaataagaatcatta-ttattatttttgggatactttattaccactcgttatttcatctcact |
204 |
Q |
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| T |
42146775 |
gtcaatttgctgttccattcataaataataaaaatcattatttattatttttgggatattttactaccactcattatttcatatcact |
42146688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 1860616 - 1860696
Alignment:
| Q |
20 |
agatgcctacatatctaactatgctacaataaaagacaagaaaatctcaagaattttaaacatgaatacgacccattagat |
100 |
Q |
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||||||||||||| ||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
1860616 |
agatgcctacatagctaacaatcctacaataaaagacaacaaaatctcaagaattttaaacatgaatacgactcattagat |
1860696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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