View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_low_34 (Length: 203)
Name: NF3489_low_34
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 39142885 - 39142717
Alignment:
| Q |
14 |
agcagagagcaaagagaaacaaacaatgttgagaaacttgtctgcaacactagaatctaccaagagaaaaatcctaacttcttcaaaatgccgaatttac |
113 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39142885 |
agcatagagcaaagagaaactaacaatgttgagaaacttgtctgcaacactagaatctaccaagagaaaaatcctaacttcttcaaaatgccgaatttac |
39142786 |
T |
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| Q |
114 |
cctcctccttctccctactccaccgctcccgtcgatgacgccccaccgaagcttctggtggttcagcct |
182 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39142785 |
cctcctccttctccctactccaccgctcccgtcgacgacgccccaccgaagcttctggtggttcagcct |
39142717 |
T |
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