View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3489_low_7 (Length: 365)
Name: NF3489_low_7
Description: NF3489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3489_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 5302873 - 5303211
Alignment:
| Q |
1 |
ctgaggcaacgataggtctaaaaacctcttaatnnnnnnntacagttgaatttcaatttaggtgggttgaactaaaagttttctcaacttcacccagaaa |
100 |
Q |
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| T |
5302873 |
ctgaggcaacgataggtctaaaaacctcttactaaaaaaatacagttgaatttcaatttaggtgggttgaactaaaagttttctcaacttcacccagaaa |
5302972 |
T |
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| Q |
101 |
attaatactaatgaatttggacttagatgatttggtttggacatgtgaagcaattagatggtggctgaataaagaaaaatgatgagatgtatgtaagtca |
200 |
Q |
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| T |
5302973 |
at----actaatgaatttggacttagatgatttggtttggacatgtgaagcaattagatggtggctgaataaagaaaaatgatgagatgtatgtaagtca |
5303068 |
T |
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| Q |
201 |
aatatattaattaccagcaaccaaaaagagaagaaaaca-ttaagacatcaatttagcaataagaaaattacttcatcagagtcatcctcgacaaatatc |
299 |
Q |
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| T |
5303069 |
aatat----attaccagcaaccaaaaagagaagaaaacatttaagacatcaatttagcaataagaaaattacttcatcagagtcatcctcgacaaatatc |
5303164 |
T |
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| Q |
300 |
gatgaatacaacattaaactatatatgagtggtataaaatttaggtgtttgt |
351 |
Q |
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| T |
5303165 |
gatcaatacaaca-taaac----tatgagtggtataaaatttaggtgtttgt |
5303211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 41 - 351
Target Start/End: Original strand, 54728522 - 54728818
Alignment:
| Q |
41 |
tacagttgaatttcaatttaggtgggttgaactaaaagttttctcaacttcacccagaaaattaatactaatgaatttggacttagatgatttggtttgg |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
54728522 |
tacagttgaatttcaatttaggtgggttgaactaaaagttttctcaacttcacccagaaaat----actaatgaatttgaacttagatgatttggtttgg |
54728617 |
T |
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| Q |
141 |
acatgtgaagcaattagatggtggctgaataaagaaaaatgatgagatgtatgtaagtcaaatatattaattaccagcaaccaaaaagagaagaaaacat |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54728618 |
acatgtgaagcaattagatggtggctgaataaagaaaaatgatgagatgtatgtaagtcaaatatatta-----cagcaaccaaaaagagaagaaaacat |
54728712 |
T |
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| Q |
241 |
taagacatcaatttagcaataagaaaattacttcatcagagtcatcctcgacaaatatcgatgaatacaacattaaactatatatgagtggtataaaatt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||||||| |
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| T |
54728713 |
taagacatcaatttagcaataagaaaattacttcatcagagtcatcctcgacaaatatagatcaatacaaca-taaac----tatgagtggtataaaatt |
54728807 |
T |
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