View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3490_high_2 (Length: 260)
Name: NF3490_high_2
Description: NF3490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3490_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 34577781 - 34578006
Alignment:
| Q |
16 |
ataggcaaattaattatcgtataatcttataaatacatatatgtcaatagtattaattgtattaactatactcatacattccctnnnnnnnnttaaccat |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| || |
|
|
| T |
34577781 |
ataggaaaattaattatcgtataatcttataaatacatatatgtcaatagtattaattatattaactatactcatacatcccctaaaaaaaattaactat |
34577880 |
T |
|
| Q |
116 |
acttatacatgattttttgttgttgaaagaattattcatacatgttaaaacaaataaaagtttaatttaattttcaaatgtccaataactaggtcgaact |
215 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34577881 |
ac--atacatgattttttgttgttgaaagaattattcatacatgttaaaacaaataaaagtttaatttaattttcaaatgtccaataactaggtcgaact |
34577978 |
T |
|
| Q |
216 |
ttagaacgatgaatcgagcaactaagct |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
34577979 |
ttagaacgatgaatcgagcaactaagct |
34578006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University