View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3491_high_1 (Length: 906)
Name: NF3491_high_1
Description: NF3491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3491_high_1 |
 | |
|
| [»] scaffold0087 (10 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0209 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 19)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 5164022 - 5163565
Alignment:
| Q |
19 |
taaattaaaaaatctgaaattcgagtccgtacttggct-gagttcacaaacttagttttcaataaatacaagagaaaaagagacaaagccgttaaagaga |
117 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5164022 |
taaataaaaaaatctgaaattctagtccgtgcttgactcgagttcacaaact-agttttcaataaatacaagagaaaaagagacaaagccgttaaagaga |
5163924 |
T |
|
| Q |
118 |
ccaatccctaagctaacataaaacccaatggttatgagcttatcttcattcttcatctacactggtaacatgtgtgtcatggctatctccagggcgaaga |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5163923 |
ccaagccctaagctaacataaaacccaatggttatgagcttatcttcattcttcatctacactggtaacatgtgtgtcatggctatctccagggcaaaga |
5163824 |
T |
|
| Q |
218 |
tttatgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttcta |
317 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5163823 |
tttatgagtggctgtccacaaagtcattcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttcta |
5163724 |
T |
|
| Q |
318 |
agttgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattc |
417 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5163723 |
agttgttgaa------------------aagaaatgtcaaatttgaaaagtttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattc |
5163642 |
T |
|
| Q |
418 |
caacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaaccaactaata |
494 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5163641 |
caacattttcatatgaccaatgttgttgggaatgaatcctgtgagaatattccctaaaaggtttaaaccaactaata |
5163565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 254 - 504
Target Start/End: Original strand, 5889108 - 5889358
Alignment:
| Q |
254 |
ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg |
353 |
Q |
| |
|
||||| || |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5889108 |
ttccccacgtatgtagaaggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttattgaaagacaagttcatgtaactaagaaatg |
5889207 |
T |
|
| Q |
354 |
tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaa |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| || |
|
|
| T |
5889208 |
tcaaatttgaaaagcttgttggcattttacccgaaagatggtttcttgacaagtcgagtgattccaacatttccatatgaccaatgtttttgggaattaa |
5889307 |
T |
|
| Q |
454 |
tcttgtgagaatattccctgaaaggtttaaaccaactaataccacaagttt |
504 |
Q |
| |
|
|| ||||||| ||| ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
5889308 |
tcctgtgagatgatttcctgaaaggttcaaatcaactaataccacaagttt |
5889358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 206 - 504
Target Start/End: Complemental strand, 5884143 - 5883851
Alignment:
| Q |
206 |
ccagggcgaagatttatgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaa |
305 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| | || |||| ||||||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
5884143 |
ccagggcaaagatttatgagcggttgtccacaaagtcgattat------tccccacatatgaagaggaatcaaaagtttgtagttgagtgcttagtggaa |
5884050 |
T |
|
| Q |
306 |
ttttgccttctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaa |
405 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
5884049 |
ttttgccttctaagttgttgaacgacaggttcatgtaaccaagaaatgtcaaatttgaaaagcttgttggcattctacccgaaagatggtttcttgacaa |
5883950 |
T |
|
| Q |
406 |
gtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaaccaactaataccacaagttt |
504 |
Q |
| |
|
||| |||||||| |||||||||||||||| ||||||||||||||| | || ||||||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
5883949 |
gtcaagtgattctaacattttcatatgaccaatgttgttgggaatcattcctgtgagattattccctgaaaggtttaaaccaactaatgcaacaagttt |
5883851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 679 - 896
Target Start/End: Original strand, 5165273 - 5165491
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||||| |||| ||| ||||||||| |||||||||||||| |||||||| |||| |||||||||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
5165273 |
ttgaatttcgtcaattgatccattataggttttgattccaccattcggtaaaagtagagttgttgtttcggacattgtctatgtgccaaggacttggtca |
5165372 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
5165373 |
tgtacaatgaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgaaaccttatccccaagacaaagaatgatagcactgac |
5165472 |
T |
|
| Q |
878 |
cgctttatcattcatctca |
896 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5165473 |
cgctttatcattcatctca |
5165491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 214 - 485
Target Start/End: Complemental strand, 5853974 - 5853709
Alignment:
| Q |
214 |
aagatttatgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgcct |
313 |
Q |
| |
|
|||||||||||||||| |||||||||||| | || |||| ||||||| | ||| |||||||| |||||| |||||||||| ||||||||||||| |
|
|
| T |
5853974 |
aagatttatgagtggtggtccacaaagtcgattat------tccccacatatgaataggaatcaaaagtttgtagctgagtgcttattggaattttgcct |
5853881 |
T |
|
| Q |
314 |
tctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| | |
|
|
| T |
5853880 |
tctaagttgttgaaagacaagttcatgtaactaagagatgttaaatttgaaaagcttgttggcattctaccagaaagatggtttcttgacaaatcgagcg |
5853781 |
T |
|
| Q |
414 |
attccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaac |
485 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||||||| |||| ||||||| |||||| |||||||||||||| |
|
|
| T |
5853780 |
attctaacattttcatatgaccaatgttattgggaattaatcctgtgagattattccttgaaaggtttaaac |
5853709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 214 - 504
Target Start/End: Complemental strand, 5881419 - 5881135
Alignment:
| Q |
214 |
aagatttatgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgcct |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||||| | |||||||||||| ||| |
|
|
| T |
5881419 |
aagatttatgagtggctgtccacaaagtcc------actgttccccacatatgcagagggatgaaaagtttgtagttgagtacctagtggaattttccct |
5881326 |
T |
|
| Q |
314 |
tctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtg |
413 |
Q |
| |
|
||||| |||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||||| | || |
|
|
| T |
5881325 |
tctaaattgttgaacgacaggttcatgtaaccaagaaatgtcaaacttgaaaagcttgttggcattttaccgtagagatgatttcttgacaagtccaatg |
5881226 |
T |
|
| Q |
414 |
attccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaaccaactaataccacaagttt |
504 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||||||| |||| ||||||| ||| |||||||||| ||||||||||||| |||| ||||| |
|
|
| T |
5881225 |
attctaacattttcatatgaccaatgtttttgggaattaatcctgtgagatgatttcctgaaaggtctaaaccaactaatgccacgagttt |
5881135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 250 - 498
Target Start/End: Complemental strand, 5821671 - 5821423
Alignment:
| Q |
250 |
actgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaaga |
349 |
Q |
| |
|
||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||||||||| |||| |
|
|
| T |
5821671 |
actgttccccacatatgaagatggatcaaaagtttgtagttgagtgcttagtggaattttcccttctaaattgttgaatgacaggttcatgtaaccaaga |
5821572 |
T |
|
| Q |
350 |
aatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaa |
449 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||||| | |||||| || ||| |||||||| ||||||| | |||| |
|
|
| T |
5821571 |
aatgtcaaacttgaaaagcttgttggcattttaccgtagagatgatttcttgacaagtccaatgattctaaactttccatatgaccaatgttgctaggaa |
5821472 |
T |
|
| Q |
450 |
tgaatcttgtgagaatattccctgaaaggtttaaaccaactaataccac |
498 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
5821471 |
tgaatcctgtgagattattccttgaaaggtttaaaccaactaataccac |
5821423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 214 - 484
Target Start/End: Complemental strand, 5831033 - 5830769
Alignment:
| Q |
214 |
aagatttatgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgcct |
313 |
Q |
| |
|
|||||||||||||||| |||||||||||| | || |||| ||||||| | ||| |||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
5831033 |
aagatttatgagtggtggtccacaaagtcgattat------tccccacatatgaataggaatcaaaagtttgtagttgagtgcttactggaattttgccg |
5830940 |
T |
|
| Q |
314 |
tctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtg |
413 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
5830939 |
tctaagttattgaaagacaagttcatgttattaagaaatgtcaaatttgaaaagctcgttggcattctaccagaaagatggtttcttgacaagtcgagtg |
5830840 |
T |
|
| Q |
414 |
attccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaa |
484 |
Q |
| |
|
|||| ||| ||| |||||||| ||||||| | ||||||| || ||||||| |||||| ||||||||||||| |
|
|
| T |
5830839 |
attctaacctttccatatgaccaatgttgctaggaatgattcctgtgagattattccttgaaaggtttaaa |
5830769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 254 - 504
Target Start/End: Complemental strand, 5762106 - 5761857
Alignment:
| Q |
254 |
ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg |
353 |
Q |
| |
|
||||| ||||||| ||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
5762106 |
ttcccaacatatgatgaggggccaaaagtttgtagttgagtgcttatgggaatattgccttctaagttgttgaaa-acaagttcatgtgactaagaaatg |
5762008 |
T |
|
| Q |
354 |
tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaa |
453 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||||| | ||||| || |
|
|
| T |
5762007 |
tcaaatttgaaaagcttgttggcattctacctgaaagatggtttattgacaagtcgagtgattgtaaacttttcatatgaccaatgttgctaggaataaa |
5761908 |
T |
|
| Q |
454 |
tcttgtgagaatattccctgaaaggtttaaaccaactaataccacaagttt |
504 |
Q |
| |
|
|| ||||||| |||||| ||||||||||||| || ||||| |||| ||||| |
|
|
| T |
5761907 |
tcctgtgagattattccatgaaaggtttaaagcagctaatgccacgagttt |
5761857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 25942420 - 25942203
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
25942420 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
25942321 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
25942320 |
tgtataatgaatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
25942221 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25942220 |
cgctttatcattcatctc |
25942203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 679 - 895
Target Start/End: Original strand, 17694281 - 17694498
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||| ||| |||| ||||||||||||||||||| ||||||||| || ||||||| | |
|
|
| T |
17694281 |
ttgaactccgtcagttgctccattataggttttgactccaccattcgataaaagtagagttgttgtttcagacattttctatgtgccaaagacttggtta |
17694380 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
17694381 |
tgtataattaatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
17694480 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17694481 |
cgctttatcattcatctc |
17694498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 13879490 - 13879273
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
13879490 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
13879391 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
13879390 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
13879291 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
13879290 |
cgccttatcattcatctc |
13879273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 742 - 895
Target Start/End: Original strand, 22351348 - 22351501
Alignment:
| Q |
742 |
gtttcagacattgtctatgtgctaagcacttggtcatgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcga |
841 |
Q |
| |
|
||||| ||||||| |||||||| || | ||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| | |
|
|
| T |
22351348 |
gtttccgacattgactatgtgccaaagatttggtcatgtataatgaatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaa |
22351447 |
T |
|
| Q |
842 |
caccttatcctcaagacaaagaatgatagcactgaacgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
22351448 |
caccttatccccaagacatagaatgatagcactgatcgctttatcattcatctc |
22351501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 324 - 442
Target Start/End: Original strand, 2715409 - 2715531
Alignment:
| Q |
324 |
tgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttg----acaagtcgagtgattcca |
419 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| | |||||||||||||||| ||| |||||| ||||||| | |||||||| ||||| | |
|
|
| T |
2715409 |
tgaaagacaagttcatgtaacttatgaatgtcaaattagcaaagcttgttggcattctacaataaagataatttcttgatatataagtcgagcgattcta |
2715508 |
T |
|
| Q |
420 |
acattttcatatgacaaatgttg |
442 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2715509 |
acattttcatatgacaaatgttg |
2715531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 5881527 - 5881478
Alignment:
| Q |
117 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
166 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5881527 |
accaatcaccaagctaacataaaacccaatggttatgagcttatcttcat |
5881478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 5884243 - 5884186
Alignment:
| Q |
117 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcattcttcatct |
175 |
Q |
| |
|
||||| ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
5884243 |
accaagccctaaggtaacataaaacccaaaggttatgagcttatcttca-tcttcatct |
5884186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 5762242 - 5762193
Alignment:
| Q |
117 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
166 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5762242 |
accaatcaccaagctaacataaaacccaaaggttatgagcttatcttcat |
5762193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 5831134 - 5831095
Alignment:
| Q |
127 |
aagctaacataaaacccaatggttatgagcttatcttcat |
166 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5831134 |
aagctaacataaaacccaaaggttatgagcttatcttcat |
5831095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 5854075 - 5854036
Alignment:
| Q |
127 |
aagctaacataaaacccaatggttatgagcttatcttcat |
166 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5854075 |
aagctaacataaaacccaaaggttatgagcttatcttcat |
5854036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 176; Significance: 2e-94; HSPs: 10)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 214 - 504
Target Start/End: Complemental strand, 41146 - 40862
Alignment:
| Q |
214 |
aagatttatgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgcct |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41146 |
aagatttatgagtggctgtccacaaagtcc------actgttcccgacatatgtagagggatcaaaagattgtagttgagtgcttagtggaattttacct |
41053 |
T |
|
| Q |
314 |
tctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtg |
413 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| | || ||||||||||||||||||||||| |||| |
|
|
| T |
41052 |
tctaagttgttgaacgacaagttcatgtaactaagaaatgtcaaatacgaaaagcttggtggcattctcccagaaagatggtttcttgacaagtcaagtg |
40953 |
T |
|
| Q |
414 |
attccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaaccaactaataccacaagttt |
504 |
Q |
| |
|
|||| || ||| |||||||| ||||||||||||||| |||| ||||||| |||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
40952 |
attctaatgtttccatatgaccaatgttgttgggaattaatcctgtgagattattccttgaaaggtttaaaccagctaatgccacaagttt |
40862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 262 - 504
Target Start/End: Complemental strand, 31071 - 30829
Alignment:
| Q |
262 |
atatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaattt |
361 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31071 |
atatgtagatggatcaaaagattgtagttgagtgcttagtggaatttttccttctaagttgttgaaagacaagtccatgtaactaagaaatgtcaaattt |
30972 |
T |
|
| Q |
362 |
gaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtga |
461 |
Q |
| |
|
| ||||| ||||||||| ||||||||| ||| |||||||| ||||| |||||||| || ||| |||||||| ||||||| | |||||||||| ||||| |
|
|
| T |
30971 |
gttaagctcgttggcattctacctgaaatatgttttcttgataagtctagtgattctaatctttccatatgaccaatgttgctaggaatgaatcctgtga |
30872 |
T |
|
| Q |
462 |
gaatattccctgaaaggtttaaaccaactaataccacaagttt |
504 |
Q |
| |
|
|| |||||| |||||||||||||||| ||||| |||| ||||| |
|
|
| T |
30871 |
gattattccatgaaaggtttaaaccagctaatgccacgagttt |
30829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 261 - 504
Target Start/End: Complemental strand, 20724 - 20481
Alignment:
| Q |
261 |
catatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatt |
360 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20724 |
catatgtagatggaccaaaagattgtagttgagtgcatagtggaatttttccttctaagttgttgaaagacaagtccatgtaactaagaaatgtcaaatt |
20625 |
T |
|
| Q |
361 |
tgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtg |
460 |
Q |
| |
|
||| ||||| || |||||| |||| |||| ||| |||||||| ||||| |||||||| ||| ||| |||||||| ||||||| | |||||||||| |||| |
|
|
| T |
20624 |
tgagaagctcgtcggcattctaccagaaatatgatttcttgagaagtcaagtgattctaacctttccatatgaccaatgttgctaggaatgaatcctgtg |
20525 |
T |
|
| Q |
461 |
agaatattccctgaaaggtttaaaccaactaataccacaagttt |
504 |
Q |
| |
|
||| |||||| |||||||||||||||| ||||| |||| ||||| |
|
|
| T |
20524 |
agattattccatgaaaggtttaaaccagctaatgccacgagttt |
20481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 254 - 504
Target Start/End: Complemental strand, 13672 - 13423
Alignment:
| Q |
254 |
ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg |
353 |
Q |
| |
|
||||| ||||||| ||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
13672 |
ttcccaacatatgatgaggggccaaaagtttgtagttgagtgcttatgggaatattgccttctaagttgttgaaa-acaagttcatgtgactaagaaatg |
13574 |
T |
|
| Q |
354 |
tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaa |
453 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||| | ||||| || |
|
|
| T |
13573 |
tcaaatttgaaaagcttgttggcattctacctgaaagatggtttcttgacaagtcgagtgattgtaaactttccatatgaccaatgttgctaggaataaa |
13474 |
T |
|
| Q |
454 |
tcttgtgagaatattccctgaaaggtttaaaccaactaataccacaagttt |
504 |
Q |
| |
|
|| | ||||| |||||| ||||||||| ||| || ||||| |||| ||||| |
|
|
| T |
13473 |
tcctttgagattattccatgaaaggttgaaagcagctaatgccacgagttt |
13423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #5
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 254 - 484
Target Start/End: Complemental strand, 35070 - 34841
Alignment:
| Q |
254 |
ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg |
353 |
Q |
| |
|
||||| ||||||| | ||| ||||||| ||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||| | ||||| ||| |
|
|
| T |
35070 |
ttccccacatatgaataggaatcaaaat-ttgtagttgagtgcttactggaattttgtcgtctaagttattgaaagacaagttcatgttattaagagatg |
34972 |
T |
|
| Q |
354 |
tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaa |
453 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||| |||||||| ||| ||| | ||||||| |
|
|
| T |
34971 |
tcaaatttgaaaagctcgttggcattctaccagaaagatggtttcttgacaagtcgagtgattctaacctttccatatgaccaattttgctaggaatgat |
34872 |
T |
|
| Q |
454 |
tcttgtgagaatattccctgaaaggtttaaa |
484 |
Q |
| |
|
|| ||||||| |||||| ||||||||||||| |
|
|
| T |
34871 |
tcctgtgagattattccttgaaaggtttaaa |
34841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 41254 - 41205
Alignment:
| Q |
117 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
166 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41254 |
accaatcaccaagctaacataaaacccaatggttatgagcttatcttcat |
41205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 13808 - 13759
Alignment:
| Q |
117 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
166 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13808 |
accaatcaccaagctaacataaaacccaaaggttatgagcttatcttcat |
13759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 20872 - 20824
Alignment:
| Q |
118 |
ccaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
166 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
20872 |
ccaagccccaagctaacataaaacccaaaggttattagcttatcttcat |
20824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 31220 - 31172
Alignment:
| Q |
118 |
ccaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
166 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
31220 |
ccaagccccaagctaacataaaacccaaaggttattagcttatcttcat |
31172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 35203 - 35164
Alignment:
| Q |
127 |
aagctaacataaaacccaatggttatgagcttatcttcat |
166 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35203 |
aagctaacataaaacccaaatgttatgagcttatcttcat |
35164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 8e-76; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 679 - 894
Target Start/End: Original strand, 47882318 - 47882534
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || ||| |||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47882318 |
ttgaactccgtctgttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgctaaggacttggtca |
47882417 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
47882418 |
tgtacaatgaatcaagtttatttcacatagacacaacagtagtctcccttgctacctctctcaacaccttatccccaagacacaaaatgatagcactgac |
47882517 |
T |
|
| Q |
878 |
cgctttatcattcatct |
894 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
47882518 |
cgctttatcattcatct |
47882534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 679 - 895
Target Start/End: Original strand, 22625409 - 22625626
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
22625409 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
22625508 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || || ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
22625509 |
tgtataatgaatcaagtttattccacatagacacagcagtagtctcccttgatacttctatcaacaccttatccccaagacacagaatgatagcgctgac |
22625608 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22625609 |
cgctttatcattcatctc |
22625626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 679 - 895
Target Start/End: Original strand, 10612207 - 10612424
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| || | ||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
10612207 |
ttgaactccgtcagttgctccattataggttttgactccaccatttgataaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
10612306 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||| | ||| ||||||||||| ||| ||| ||||||||||| |||| |
|
|
| T |
10612307 |
tgtataatgaatcaagtttattccacatagacacaacaatagtctcccttgatacttttctcaacaccttatccccaaaacacagaatgatagcgctgac |
10612406 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10612407 |
cgctttatcattcatctc |
10612424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 10897756 - 10897539
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || ||||||||||| |||||| ||||||| |||||| |||||||| |||| |||||||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
10897756 |
ttgaactccgtcagttgctcgattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgcctatgggccaaagacttggtca |
10897657 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
10897656 |
tgtataatgaatcaagtttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
10897557 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10897556 |
cgctttatcattcatctc |
10897539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 679 - 895
Target Start/End: Original strand, 29913385 - 29913602
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
29913385 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
29913484 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| || | |
|
|
| T |
29913485 |
tgtataatgaatcaagtttattcctcatagacacagcagtagactcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctaac |
29913584 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
29913585 |
cgccttatcattcatctc |
29913602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 679 - 891
Target Start/End: Complemental strand, 54189261 - 54189048
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
54189261 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
54189162 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||| ||||||| ||| || ||| ||||||||||| ||||||| | ||||||||| |||| |
|
|
| T |
54189161 |
tgtataatgaatcaagtttattccacatagacacagcagtagtttcccttgatacttctctcaacaccttatccccaagacacataatgatagcgctgac |
54189062 |
T |
|
| Q |
878 |
cgctttatcattca |
891 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
54189061 |
cgccttatcattca |
54189048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 691 - 895
Target Start/End: Complemental strand, 16458205 - 16458000
Alignment:
| Q |
691 |
agttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaataaat |
789 |
Q |
| |
|
||||||||||||||| ||||||| |||||| || ||||| |||| ||||||||||||||||| ||||||||||| || ||||||||||||| ||| ||| |
|
|
| T |
16458205 |
agttgctccattataggttttgactccaccatttggtaaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtcatgtataatgaat |
16458106 |
T |
|
| Q |
790 |
caagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatcatt |
889 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| ||| |||||||| |
|
|
| T |
16458105 |
caagcttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgaccgccttatcatt |
16458006 |
T |
|
| Q |
890 |
catctc |
895 |
Q |
| |
|
|||||| |
|
|
| T |
16458005 |
catctc |
16458000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 6304062 - 6303845
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
6304062 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
6303963 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
6303962 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgttgac |
6303863 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
6303862 |
cgccttatcattcatctc |
6303845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 679 - 895
Target Start/End: Original strand, 10205121 - 10205338
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | |||||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
10205121 |
ttgaactccgtcagttgctccattataggttttgactccaccatacggtaaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
10205220 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| | | |||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
10205221 |
tgtataatgaatcaagcttattccacatagacacagcagtagcccctcttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
10205320 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
10205321 |
cgccttatcattcatctc |
10205338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 679 - 895
Target Start/End: Original strand, 10098225 - 10098442
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||| ||||||||||||| ||||||| |||||| | |||||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
10098225 |
ttgaactccgtcaattgctccattataggttttgactccaccatacggtaaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
10098324 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| | |||||| ||| || ||| ||||||||||| ||||||| | ||||||||| |||| |
|
|
| T |
10098325 |
tgtataatgaatcaagcttattccacatagacacagcagtagccccccttgatacttctctcaacaccttatccccaagacacaaaatgatagcgctgac |
10098424 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
10098425 |
cgccttatcattcatctc |
10098442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 3e-69; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 33033391 - 33033175
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| |||| || |||||| |||||||| |||| |||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
33033391 |
ttgaactccgtcagttgctccattataagtttcgactccaccattcggtaaaagta-agttgttgcttcagacattgtctatgtgccaaggacttggtca |
33033293 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
33033292 |
tgtacaatgaatcaagtttattccacatagacacagtagtagtctcccttgctacctctctcaacaccttatccccaagacacagaatgatagcactgac |
33033193 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33033192 |
cgctttatcattcatctc |
33033175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 688 - 895
Target Start/End: Complemental strand, 21034610 - 21034402
Alignment:
| Q |
688 |
gtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaata |
786 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||| |||| |||||||||||||| |||||||||||||| || ||||||||||||| ||| |
|
|
| T |
21034610 |
gtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagtcattgtctatgtgccaaagacttggtcatgtataatg |
21034511 |
T |
|
| Q |
787 |
aatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatc |
886 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||| || || ||||||||||| |||| || | |||||||||||||| ||||||||| |
|
|
| T |
21034510 |
aatcaagtttattccacatagacacagcagtagtctcccttgatacttctcttaacaccttatccccaagccacaaaatgatagcactgaccgctttatc |
21034411 |
T |
|
| Q |
887 |
attcatctc |
895 |
Q |
| |
|
||||||||| |
|
|
| T |
21034410 |
attcatctc |
21034402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 689 - 895
Target Start/End: Complemental strand, 28891505 - 28891298
Alignment:
| Q |
689 |
tcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaataa |
787 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||||||| ||| | |
|
|
| T |
28891505 |
tcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtcatgtataatga |
28891406 |
T |
|
| Q |
788 |
atcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatca |
887 |
Q |
| |
|
|||||| |||||||||||||||||| || ||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| ||| |||||| |
|
|
| T |
28891405 |
atcaagcttattccacatagacacagcattagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgaccgccttatca |
28891306 |
T |
|
| Q |
888 |
ttcatctc |
895 |
Q |
| |
|
|||||||| |
|
|
| T |
28891305 |
ttcatctc |
28891298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 679 - 895
Target Start/End: Original strand, 16756690 - 16756907
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
16756690 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
16756789 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
16756790 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
16756889 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
16756890 |
cgccttatcattcatctc |
16756907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 28328659 - 28328442
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| |||||||||||||| || ||||||||||| || ||||||||| |
|
|
| T |
28328659 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcaggcactgtctatgtgccaaagacttggtca |
28328560 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
28328559 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
28328460 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
28328459 |
cgccttatcattcatctc |
28328442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 679 - 892
Target Start/End: Complemental strand, 15945409 - 15945189
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgatt---ccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttgg |
774 |
Q |
| |
|
||||| || ||||||| |||||||||| ||||||| | ||||| ||| |||| |||| ||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
15945409 |
ttgaactccgtcagtttctccattataggttttgagtacgccaccattcagtaaaagtagagttgttgtttcagacattgtctatgtgccaaggacttgg |
15945310 |
T |
|
| Q |
775 |
tcatgtacaataaatcaagtttattccacatagacac---aacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagc |
871 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||| | |||||||||||||| |||||| | | || ||||||| ||||||| | |||||| || |
|
|
| T |
15945309 |
tcatgtacgatgaatcatgtttattccacatagacacagtagtagtagtctcccttgatacctctcccaactccttatctccaagacacaaaatgatggc |
15945210 |
T |
|
| Q |
872 |
actgaacgctttatcattcat |
892 |
Q |
| |
|
||||| | ||||||||||||| |
|
|
| T |
15945209 |
actgaccactttatcattcat |
15945189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 679 - 778
Target Start/End: Original strand, 4819669 - 4819769
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||| ||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
4819669 |
ttgaactccgtcatttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
4819768 |
T |
|
| Q |
778 |
t |
778 |
Q |
| |
|
| |
|
|
| T |
4819769 |
t |
4819769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 610
Target Start/End: Original strand, 32211224 - 32211293
Alignment:
| Q |
541 |
tgagcaatattgacagaaaacatgaacgtgtctagctctggttgaaaagaataagagatatcaagagaaa |
610 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| || | |||||||||||| |||||||||||||| |
|
|
| T |
32211224 |
tgagcaatattgacaggaaacatgaatacctctagctttgatcgaaaagaataagtgatatcaagagaaa |
32211293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 3e-69; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 679 - 895
Target Start/End: Original strand, 44016095 - 44016312
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
44016095 |
ttgaactccgtcagttgctccattataggttttgactccactattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaggacttggtca |
44016194 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| ||| ||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
44016195 |
tgtacaatgaatcaagtttattccacatagacacaacaatagtttcccttgctacctctctcaacaccttatcccaaagacatagaatgatagaactgac |
44016294 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
44016295 |
cgctttatcattcatctc |
44016312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 25352103 - 25351886
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
25352103 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
25352004 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
25352003 |
tgtataatgaatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
25351904 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25351903 |
cgctttatcattcatctc |
25351886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 7070546 - 7070329
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| |||||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
7070546 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacattgcctatgtgccaaagacttggtca |
7070447 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
7070446 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
7070347 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
7070346 |
cgccttatcattcatctc |
7070329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 25406165 - 25405948
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
25406165 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
25406066 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
25406065 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
25405966 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
25405965 |
cgccttatcattcatctc |
25405948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 679 - 895
Target Start/End: Original strand, 3324217 - 3324434
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
3324217 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
3324316 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| ||||||| ||| || ||| ||||||| ||| ||||||| ||||||||||| |||| |
|
|
| T |
3324317 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctccctttatacttctctcaacaccttgtccccaagacacagaatgatagcgctgac |
3324416 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
3324417 |
cgccttatcattcatctc |
3324434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 3e-69; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 679 - 895
Target Start/End: Original strand, 20054190 - 20054407
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
20054190 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
20054289 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
20054290 |
tgtataatgaatcaagtttattccacatagacacaacagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
20054389 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20054390 |
cgctttatcattcatctc |
20054407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 679 - 895
Target Start/End: Original strand, 22716663 - 22716880
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
22716663 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
22716762 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
22716763 |
tgtataatgaatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
22716862 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22716863 |
cgctttatcattcatctc |
22716880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 679 - 896
Target Start/End: Original strand, 28456933 - 28457151
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || ||||||| ||||||||| ||||||| |||||| |||||||| |||| | |||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
28456933 |
ttgaactccgtcagttattccattataggttttgactccaccattcggtaaaagtagaattgttgtttcagacattgtctatgtgacaaggacttggtca |
28457032 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||| | || |||||| ||| ||||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
28457033 |
tgtacaatgaatcaagtttattccacatagaaacaacagtagtctctcatgttacctctctcaacaccttatccccaagacacagaatgatggcactgat |
28457132 |
T |
|
| Q |
878 |
cgctttatcattcatctca |
896 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28457133 |
cgctttatcattcatctca |
28457151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 2736956 - 2736739
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||| |||| |||||||| || ||||||||| |
|
|
| T |
2736956 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagaaattgcctatgtgccaaagacttggtca |
2736857 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || || ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
2736856 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctttcaacaccttatccccaagacacagaatgatagcgctgac |
2736757 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
2736756 |
cgccttatcattcatctc |
2736739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 39680797 - 39680580
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| |||||||||||||| || ||||||||||| || ||||||||| |
|
|
| T |
39680797 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcaggcactgtctatgtgccaaagacttggtca |
39680698 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| |||||| ||||||||||| |||| |
|
|
| T |
39680697 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccctaagacacagaatgatagcgctgac |
39680598 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
39680597 |
tgccttatcattcatctc |
39680580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 687 - 851
Target Start/End: Original strand, 10941948 - 10942113
Alignment:
| Q |
687 |
tgtcagttgctccattatatgttttgattccaccttcg-gtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaat |
785 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| || |||| |||| |||||||||||||||||||||||| |||| || |||| ||||| |||||| |
|
|
| T |
10941948 |
tgtcagttgctccattatatattttgactccaccatccagtaaaagtagagttgttgtttcagacattgtctacgtgccaaagactttgtcatatacaat |
10942047 |
T |
|
| Q |
786 |
aaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcc |
851 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
10942048 |
gaatctagtttattccatatagacacatcagtagtctcccttgctacctttctcaacaccttatcc |
10942113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 687 - 851
Target Start/End: Original strand, 10947817 - 10947982
Alignment:
| Q |
687 |
tgtcagttgctccattatatgttttgattccaccttcg-gtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaat |
785 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| || |||| |||| |||||||||||||||||||||||| |||| || |||| ||||| |||||| |
|
|
| T |
10947817 |
tgtcagttgctccattatatattttgactccaccatccagtaaaagtagagttgttgtttcagacattgtctacgtgccaaagactttgtcatatacaat |
10947916 |
T |
|
| Q |
786 |
aaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcc |
851 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
10947917 |
gaatctagtttattccatatagacacatcagtagtctcccttgctacctttctcaacaccttatcc |
10947982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 610
Target Start/End: Complemental strand, 22985861 - 22985792
Alignment:
| Q |
541 |
tgagcaatattgacagaaaacatgaacgtgtctagctctggttgaaaagaataagagatatcaagagaaa |
610 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||| || | |||||||||||| |||||||||||||| |
|
|
| T |
22985861 |
tgagcaatattgataggaaacatgaatacctctagctttgatcgaaaagaataagtgatatcaagagaaa |
22985792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 610
Target Start/End: Original strand, 37781103 - 37781172
Alignment:
| Q |
541 |
tgagcaatattgacagaaaacatgaacgtgtctagctctggttgaaaagaataagagatatcaagagaaa |
610 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| || || | |||||||||||| |||||||||||||| |
|
|
| T |
37781103 |
tgagcaatattgacaggaaacatgaatacctctaactttgatcgaaaagaataagtgatatcaagagaaa |
37781172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 1e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 688 - 895
Target Start/End: Complemental strand, 4559050 - 4558842
Alignment:
| Q |
688 |
gtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaata |
786 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
4559050 |
gtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtaccaagtacttggtcatgtacaatg |
4558951 |
T |
|
| Q |
787 |
aatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatc |
886 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||| ||||||| |||||||||||||| | | ||||||| |
|
|
| T |
4558950 |
aatcaagtttattccacatagacacaacaatagtctcccttcctacctctctccacaccttatccccaagacacagaatgatagcactaacctctttatc |
4558851 |
T |
|
| Q |
887 |
attcatctc |
895 |
Q |
| |
|
||||||||| |
|
|
| T |
4558850 |
attcatctc |
4558842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 691 - 895
Target Start/End: Complemental strand, 15313057 - 15312852
Alignment:
| Q |
691 |
agttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaataaat |
789 |
Q |
| |
|
||||||||||||||| ||||||| |||| | |||| ||| |||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
15313057 |
agttgctccattataggttttgactccatcattcgataaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtcatgtataataaat |
15312958 |
T |
|
| Q |
790 |
caagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatcatt |
889 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||| |||||| ||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
15312957 |
caagtttattccacatagacacagcagtagtctcccttgatacttctctcaacatcttatctccaagacacagaatgatagcgctgaccgctttatcatt |
15312858 |
T |
|
| Q |
890 |
catctc |
895 |
Q |
| |
|
|||||| |
|
|
| T |
15312857 |
catctc |
15312852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 689 - 896
Target Start/End: Complemental strand, 16633231 - 16633023
Alignment:
| Q |
689 |
tcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaataa |
787 |
Q |
| |
|
|||||| ||||||| | ||||||| |||||| ||||||| |||| ||||||||||||| ||||||| ||||||| ||| ||||||||||||||||| | |
|
|
| T |
16633231 |
tcagttactccattgtgggttttgactccaccattcggtataagtagagttgttgtttcaaacattgtgtatgtgccaaggacttggtcatgtacaatga |
16633132 |
T |
|
| Q |
788 |
atcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatca |
887 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||||||||||||| |||| ||| ||||||||||| ||| ||| |||||||| ||||||| ||||| |||| |
|
|
| T |
16633131 |
atcaattttatttcacatagacacatcagtagtctcccttgctgcctctctcaacaccttatccccaatacacagaatgatggcactgaccgcttcatca |
16633032 |
T |
|
| Q |
888 |
ttcatctca |
896 |
Q |
| |
|
||||||||| |
|
|
| T |
16633031 |
ttcatctca |
16633023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 606
Target Start/End: Original strand, 26633303 - 26633389
Alignment:
| Q |
520 |
cacttatttcaacatttgttatgagcaatattgacagaaaacatgaacgtgtctagctctggttgaaaagaataagagatatcaaga |
606 |
Q |
| |
|
||||||||||||| | |||||| |||||||||| ||||||||| || |||| ||||| | |||||||||||| |||||||||| |
|
|
| T |
26633303 |
cacttatttcaaccccttttatgaagaatattgacaagaaacatgaatgtctctaactctgatcgaaaagaataagtgatatcaaga |
26633389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 122; Significance: 4e-62; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 17076 - 16859
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||||| |||||||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
17076 |
ttgaactccgtcagttgctccattataggttttgattccaccattcggtaaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
16977 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| ||||||||||||||| ||| || ||| ||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
16976 |
tgtataatgaatcaagcttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttgtccccaagacacagaatgatagcactggc |
16877 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
16876 |
cgctttatcattcatctc |
16859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 2e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 688 - 895
Target Start/End: Complemental strand, 9522467 - 9522259
Alignment:
| Q |
688 |
gtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaata |
786 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||| ||| |||| ||||||||||||||||| ||||||||||| || ||||||||||||| ||| |
|
|
| T |
9522467 |
gtcagttgctccattataggttttgactccaccattcgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtcatgtataatg |
9522368 |
T |
|
| Q |
787 |
aatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatc |
886 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
9522367 |
aatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgaccgctttatc |
9522268 |
T |
|
| Q |
887 |
attcatctc |
895 |
Q |
| |
|
||||||||| |
|
|
| T |
9522267 |
attcatctc |
9522259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 679 - 895
Target Start/End: Original strand, 2400654 - 2400871
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || |||| |||| |
|
|
| T |
2400654 |
ttgaactctgtcagttgctccattatagattttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttagtca |
2400753 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| || ||| |||||||||||| ||||||||||||||||| ||||||| ||| || ||| ||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
2400754 |
tgtattatgaattaagtttattccatatagacacaacagtagtttcccttgatacttctctcaacaccttatccccaagacacagaatgatatcactgac |
2400853 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2400854 |
cgctttatcattcatctc |
2400871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 679 - 896
Target Start/End: Complemental strand, 14997786 - 14997570
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| || ||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
14997786 |
ttgaactccgtcagttgctccattataggttttgactccaccatttggtaaaagtagagttgttgtttcagacattgtctatgtgccaaggacttggtca |
14997687 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||| | |||||| ||||| | |
|
|
| T |
14997686 |
tgtacaa--aatcaagtctattccacatagacacaacagtagtctcccttgctacctatctcaataccttatccccaagacacataatgatggcactaac |
14997589 |
T |
|
| Q |
878 |
cgctttatcattcatctca |
896 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
14997588 |
cacgttatcattcatctca |
14997570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 6e-61; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 679 - 896
Target Start/End: Original strand, 31781890 - 31782109
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgtttt-gattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtc |
776 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||| || || ||| |||||||| |||| |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
31781890 |
ttgaattccgtcagttgcttcattattggtttttgactcgaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgtccaggacttggtc |
31781989 |
T |
|
| Q |
777 |
atgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactga |
876 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||| |||| ||| ||||||| |
|
|
| T |
31781990 |
atgtacaatgaatcaagtttattccacatagacacaacaatagtctcccttgctacctctctcaacaccttatccccaagacacagaacgatggcactga |
31782089 |
T |
|
| Q |
877 |
acgctttatcattcatctca |
896 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
31782090 |
tcgctttatcattcatctca |
31782109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 679 - 896
Target Start/End: Complemental strand, 10628110 - 10627892
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||| |||||| |||||| | |||| ||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
10628110 |
ttgaactccgtcagttgctccattatcggttttgactccaccattcggttaaagtagagttgttgtttcagacattgtctatgtgccaaggacttggtca |
10628011 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| | ||| ||||| ||||||| |||||||| ||||||| |
|
|
| T |
10628010 |
tgcacaatgaatcaagtttattccacatagacacaacaatagtctcccttgctaactctctctataccgtatccccaagacacagaatgatggcactgac |
10627911 |
T |
|
| Q |
878 |
cgctttatcattcatctca |
896 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10627910 |
agctttatcattcatctca |
10627892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 679 - 895
Target Start/End: Complemental strand, 25446238 - 25446021
Alignment:
| Q |
679 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
777 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||||| || ||| |||| ||||||||||||||||| ||||||||||| || ||||| ||| |
|
|
| T |
25446238 |
ttgaactccgtcagttgctccattataggttttgactccacctttcgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttgatca |
25446139 |
T |
|
| Q |
778 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
877 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| | |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
25446138 |
tgtataatgaatcaagtttattccacatagacatagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
25446039 |
T |
|
| Q |
878 |
cgctttatcattcatctc |
895 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
25446038 |
cgccttatcattcatctc |
25446021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 749 - 892
Target Start/End: Complemental strand, 28787079 - 28786936
Alignment:
| Q |
749 |
acattgtctatgtgctaagcacttggtcatgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacacctta |
848 |
Q |
| |
|
||||||||||||||| || |||||| |||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| |||||||| |
|
|
| T |
28787079 |
acattgtctatgtgccaaagacttggccatgtataatgaatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaacacctta |
28786980 |
T |
|
| Q |
849 |
tcctcaagacaaagaatgatagcactgaacgctttatcattcat |
892 |
Q |
| |
|
||| ||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
28786979 |
tccccaagacacagaatgatagcactgaccgctttatcattcat |
28786936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 749
Target Start/End: Complemental strand, 28788464 - 28788402
Alignment:
| Q |
688 |
gtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcaga |
749 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||| ||| ||||| |||||||||||||| |
|
|
| T |
28788464 |
gtcagttgctccattataggttttgactccaccgttcgataaaagtatggttgttgtttcaga |
28788402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 814 - 895
Target Start/End: Original strand, 16601 - 16682
Alignment:
| Q |
814 |
cagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatcattcatctc |
895 |
Q |
| |
|
||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
16601 |
cagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgaccgctttatcattcatctc |
16682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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